RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 NUP214P35658 2090 aaPredicted RBP2.19□□□□□ -2.06
USP40-209ENST00000452724 PLA2R1Q13018 1463 aa2.19□□□□□ -2.06
USP40-209ENST00000452724 MAPK8IP3Q9UPT6 1336 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 KIF26AQ9ULI4 1882 aaPredicted RBP2.18□□□□□ -2.06
USP40-209ENST00000452724 TRAV40A0A0B4J280 105 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 CRYGBP07316 175 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 LINC00869P0C866 280 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 ZNF250P15622 560 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 F2RP25116 425 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 FOXN2P32314 431 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 CX3CR1P49238 355 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 ACLYP53396 1101 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 SLC25A11Q02978 314 aaKnown RBP2.18□□□□□ -2.06
USP40-209ENST00000452724 IRF4Q15306 451 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 XKR4Q5GH76 650 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 PRMT9Q6P2P2 845 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 SASS6Q6UVJ0 657 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 FBXW12Q6X9E4 464 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 FAM228AQ86W67 206 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 LGI3Q8N145 548 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 LYPD1Q8N2G4 141 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 ARRDC1Q8N5I2 433 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 FBXL13Q8NEE6 735 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 SLC2A14Q8TDB8 520 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 ESR2Q92731 530 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 RBMXL1Q96E39 390 aaKnown RBP2.18□□□□□ -2.06
USP40-209ENST00000452724 SEH1LQ96EE3 360 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 ZNF2Q9BSG1 426 aaPredicted RBP2.18□□□□□ -2.06
USP40-209ENST00000452724 ING2Q9H160 280 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 GGA2Q9UJY4 613 aa2.18□□□□□ -2.06
USP40-209ENST00000452724 SYNJ2BP-COX16A0A087WUM0 186 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 SGK1O00141 431 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 RAB29O14966 203 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 ZNF207O43670 478 aaKnown RBP2.17□□□□□ -2.06
USP40-209ENST00000452724 RCBTB2O95199 551 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 TSPAN13O95857 204 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 UQCRFS1P1P0C7P4 283 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 OR56A5P0C7T3 313 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 UBTFL6P0CB48 400 aaPredicted RBP2.17□□□□□ -2.06
USP40-209ENST00000452724 OR5H8P0DN80 308 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 TMED10P49755 219 aaKnown RBP2.17□□□□□ -2.06
USP40-209ENST00000452724 ADARB1P78563 741 aaKnown RBP2.17□□□□□ -2.06
USP40-209ENST00000452724 SF3A2Q15428 464 aaKnown RBP2.17□□□□□ -2.06
USP40-209ENST00000452724 METTL21CQ5VZV1 264 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 CALHM1Q8IU99 346 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 SLC22A9Q8IVM8 553 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 OR5B3Q8NH48 314 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 AKR7LQ8NHP1 331 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 C15orf40Q8WUR7 153 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 KIFAP3Q92845 792 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 NTAN1Q96AB6 310 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 NEURL3Q96EH8 262 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 NARS2Q96I59 477 aaKnown RBP2.17□□□□□ -2.06
USP40-209ENST00000452724 TPD52L3Q96J77 140 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 SLC29A1Q99808 456 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 KCNE3Q9Y6H6 103 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 USP47Q96K76 1375 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 ADAMTS13Q76LX8 1427 aa2.17□□□□□ -2.06
USP40-209ENST00000452724 COL1A2P08123 1366 aa2.16□□□□□ -2.06
USP40-209ENST00000452724 LRRIQ3A6PVS8 624 aaPredicted RBP2.16□□□□□ -2.06
USP40-209ENST00000452724 MPHOSPH10O00566 681 aaKnown RBP2.16□□□□□ -2.06
USP40-209ENST00000452724 GCM2O75603 506 aaPredicted RBP2.16□□□□□ -2.06
USP40-209ENST00000452724 PALMO75781 387 aa2.16□□□□□ -2.06
USP40-209ENST00000452724 MPZL1O95297 269 aa2.16□□□□□ -2.06
USP40-209ENST00000452724 SERPINA5P05154 406 aa2.16□□□□□ -2.06
USP40-209ENST00000452724 CD5P06127 495 aa2.16□□□□□ -2.06
USP40-209ENST00000452724 ANXA5P08758 320 aa2.16□□□□□ -2.06
USP40-209ENST00000452724 WARSP23381 471 aaKnown RBP2.16□□□□□ -2.06
USP40-209ENST00000452724 CEACAM3P40198 252 aa2.16□□□□□ -2.06
USP40-209ENST00000452724 NAA10P41227 235 aaPredicted RBP2.16□□□□□ -2.06
USP40-209ENST00000452724 TNNT2P45379 298 aaPredicted RBP2.16□□□□□ -2.06
USP40-209ENST00000452724 RND2P52198 227 aa2.16□□□□□ -2.06
USP40-209ENST00000452724 SMUG1Q53HV7 270 aa2.16□□□□□ -2.06
USP40-209ENST00000452724 SLC25A34Q6PIV7 304 aa2.16□□□□□ -2.06
USP40-209ENST00000452724 BHLHA15Q7RTS1 189 aaPredicted RBP2.16□□□□□ -2.06
USP40-209ENST00000452724 NEGR1Q7Z3B1 354 aa2.16□□□□□ -2.06
USP40-209ENST00000452724 COQ8AQ8NI60 647 aa2.16□□□□□ -2.06
USP40-209ENST00000452724 RNF139Q8WU17 664 aa2.16□□□□□ -2.06
USP40-209ENST00000452724 MRGPRFQ96AM1 343 aa2.16□□□□□ -2.06
USP40-209ENST00000452724 L3HYPDHQ96EM0 354 aa2.16□□□□□ -2.06
USP40-209ENST00000452724 GALNT14Q96FL9 552 aa2.16□□□□□ -2.06
USP40-209ENST00000452724 DUS3LQ96G46 650 aaKnown RBP2.16□□□□□ -2.06
USP40-209ENST00000452724 OR5B12Q96R08 314 aa2.16□□□□□ -2.06
USP40-209ENST00000452724 SPNS1Q9H2V7 528 aa2.16□□□□□ -2.06
USP40-209ENST00000452724 OR51M1Q9H341 326 aa2.16□□□□□ -2.06
USP40-209ENST00000452724 SAMSN1Q9NSI8 373 aaKnown RBP2.16□□□□□ -2.06
USP40-209ENST00000452724 DDX19AQ9NUU7 478 aaKnown RBP2.16□□□□□ -2.06
USP40-209ENST00000452724 IKBKGQ9Y6K9 419 aa2.16□□□□□ -2.06
USP40-209ENST00000452724 A0A0U1RQV1 116 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 HEATR9A2RTY3 570 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 AIM2O14862 343 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 CCNKO75909 580 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 IGLV3-19P01714 112 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 POLR2MP0CAP2 368 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 TROVE2P10155 538 aaKnown RBP eCLIP2.15□□□□□ -2.07
USP40-209ENST00000452724 ZNF14P17017 642 aaPredicted RBP2.15□□□□□ -2.07
USP40-209ENST00000452724 ZNF24P17028 368 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 DTYMKP23919 212 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 DCKP27707 260 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 SSTR5P35346 364 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms