RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 FCGR3AP08637 254 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 OR8U8P0C7N1 319 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 CPT2P23786 658 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 P2RY2P41231 377 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 STARD6P59095 220 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 SKP1P63208 163 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 TMEM244Q5VVB8 128 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 OR10K2Q6IF99 312 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 LILRA6Q6PI73 481 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 KCTD9Q7L273 389 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 DPY19L4Q7Z388 723 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 LRRC75AQ8NAA5 344 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 ADAD2Q8NCV1 583 aaKnown RBP9.65□□□□□ -0.86
USP54-204ENST00000422491 TMEM52Q8NDY8 209 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 OR6N2Q8NGY6 317 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 CASTOR1Q8WTX7 329 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 THRSPQ92748 146 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 HOXB13Q92826 284 aaPredicted RBP9.65□□□□□ -0.86
USP54-204ENST00000422491 MRPL38Q96DV4 380 aaKnown RBP9.65□□□□□ -0.86
USP54-204ENST00000422491 NECAB3Q96P71 396 aaPredicted RBP9.65□□□□□ -0.86
USP54-204ENST00000422491 AMELYQ99218 206 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 MICU1Q9BPX6 476 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 NMES1Q9C002 83 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 SRA1Q9HD15 236 aaKnown RBP9.65□□□□□ -0.86
USP54-204ENST00000422491 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.65□□□□□ -0.86
USP54-204ENST00000422491 CACFD1Q9UGQ2 172 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 TIMM10BQ9Y5J6 103 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 TMEM235A6NFC5 223 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 IGLON5A6NGN9 336 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 MFNGO00587 321 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 EFSO43281 561 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 MT-ND4LP03901 98 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 ERCC1P07992 297 aaPredicted RBP9.64□□□□□ -0.87
USP54-204ENST00000422491 CD37P11049 281 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 HTR2CP28335 458 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 SERPINF1P36955 418 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 PMELP40967 661 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 ARRB1P49407 418 aaPredicted RBP9.64□□□□□ -0.87
USP54-204ENST00000422491 RPS15AP62244 130 aaKnown RBP9.64□□□□□ -0.87
USP54-204ENST00000422491 ADAM8P78325 824 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 RNASE10Q5GAN6 216 aaKnown RBP9.64□□□□□ -0.87
USP54-204ENST00000422491 FDX2Q6P4F2 183 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 DHRS11Q6UWP2 260 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 ZNF550Q7Z398 422 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 ZNF584Q8IVC4 421 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 RCBTB1Q8NDN9 531 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 ZNF285Q96NJ3 590 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 PRMT8Q9NR22 394 aaPredicted RBP9.64□□□□□ -0.87
USP54-204ENST00000422491 MBNL1Q9NR56 388 aaKnown RBP9.64□□□□□ -0.87
USP54-204ENST00000422491 MRPS18BQ9Y676 258 aaKnown RBP9.64□□□□□ -0.87
USP54-204ENST00000422491 IGKV1D-42A0A075B6H8 117 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 TBC1D3IA0A087WXS9 549 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 A0A0A6YYH2 397 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 EDDM13A0A1B0GTR0 161 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 C5orf51A6NDU8 294 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 A6NJ64 397 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 HSPB2A8KAH6 182 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 BLOC1S5-TXNDC5H3BN57 136 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 WRBO00258 174 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 TXNL1O43396 289 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 B3GALT2O43825 422 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 STK17BO94768 372 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 SLC35G6P0C7Q6 338 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 ST6GAL1P15907 406 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 VAMP1P23763 118 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 AKR1C3P42330 323 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 LPAR6P43657 344 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 ACTR1AP61163 376 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 HTRA3P83110 453 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 PSG6Q00889 435 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 DHCR24Q15392 516 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 HSPB2Q16082 182 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 CDNFQ49AH0 187 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 TCEAL5Q5H9L2 206 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 GLYATL3Q5SZD4 288 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 TMEM225Q6GV28 225 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 LRRC69Q6ZNQ3 347 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 WFIKKN2Q8TEU8 576 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 CTHRC1Q96CG8 243 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 TM4SF19Q96DZ7 209 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 TMEM41AQ96HV5 264 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 FN3KRPQ9HA64 309 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 DZANK1Q9NVP4 752 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 HIF3AQ9Y2N7 669 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 WIF1Q9Y5W5 379 aa9.64□□□□□ -0.87
USP54-204ENST00000422491 LAMA2P24043 3122 aaKnown RBP9.64□□□□□ -0.87
USP54-204ENST00000422491 C13orf42A0A1B0GVH6 325 aa9.63□□□□□ -0.87
USP54-204ENST00000422491 FITM1A5D6W6 292 aa9.63□□□□□ -0.87
USP54-204ENST00000422491 WIPF3A6NGB9 483 aa9.63□□□□□ -0.87
USP54-204ENST00000422491 ZNF860A6NHJ4 632 aa9.63□□□□□ -0.87
USP54-204ENST00000422491 PRR19A6NJB7 356 aa9.63□□□□□ -0.87
USP54-204ENST00000422491 GPR89AB7ZAQ6 455 aa9.63□□□□□ -0.87
USP54-204ENST00000422491 PRAMEF26H0Y7S4 382 aa9.63□□□□□ -0.87
USP54-204ENST00000422491 H7C1C5 153 aa9.63□□□□□ -0.87
USP54-204ENST00000422491 MBTPS2O43462 519 aa9.63□□□□□ -0.87
USP54-204ENST00000422491 GPR89BP0CG08 455 aa9.63□□□□□ -0.87
USP54-204ENST00000422491 MAOAP21397 527 aa9.63□□□□□ -0.87
USP54-204ENST00000422491 CSNK1EP49674 416 aaKnown RBP9.63□□□□□ -0.87
USP54-204ENST00000422491 LCN6P62502 163 aa9.63□□□□□ -0.87
USP54-204ENST00000422491 PHF19Q5T6S3 580 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms