RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 OR3A2P47893 321 aa15.1■□□□□ 0.01
CCDC28B-202ENST00000421922 LSM6P62312 80 aaKnown RBP15.1■□□□□ 0.01
CCDC28B-202ENST00000421922 MRPS34P82930 218 aaKnown RBP15.1■□□□□ 0.01
CCDC28B-202ENST00000421922 EGR3Q06889 387 aa15.1■□□□□ 0.01
CCDC28B-202ENST00000421922 KCNMB1Q16558 191 aa15.1■□□□□ 0.01
CCDC28B-202ENST00000421922 CDONQ4KMG0 1287 aa15.1■□□□□ 0.01
CCDC28B-202ENST00000421922 SSX6Q7RTT6 188 aa15.1■□□□□ 0.01
CCDC28B-202ENST00000421922 KCTD20Q7Z5Y7 419 aa15.1■□□□□ 0.01
CCDC28B-202ENST00000421922 KRT77Q7Z794 578 aa15.1■□□□□ 0.01
CCDC28B-202ENST00000421922 KLBQ86Z14 1044 aa15.1■□□□□ 0.01
CCDC28B-202ENST00000421922 RFLNBQ8N5W9 214 aa15.1■□□□□ 0.01
CCDC28B-202ENST00000421922 OR52N5Q8NH56 324 aa15.1■□□□□ 0.01
CCDC28B-202ENST00000421922 HAVCR2Q8TDQ0 301 aa15.1■□□□□ 0.01
CCDC28B-202ENST00000421922 WBP1Q96G27 269 aa15.1■□□□□ 0.01
CCDC28B-202ENST00000421922 FOXB1Q99853 325 aa15.1■□□□□ 0.01
CCDC28B-202ENST00000421922 ISYNA1Q9NPH2 558 aa15.1■□□□□ 0.01
CCDC28B-202ENST00000421922 ZGRF1Q86YA3 2104 aa15.1■□□□□ 0.01
CCDC28B-202ENST00000421922 METTL15A6NJ78 407 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 CCRL2O00421 344 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 CRHP06850 196 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 ALOX5APP20292 161 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 CD79BP40259 229 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 OR12D2P58182 307 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 FAPQ12884 760 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 MRPL28Q13084 256 aaKnown RBP15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 TAF13Q15543 124 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 GPR107Q5VW38 600 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 ZNF544Q6NX49 715 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 ZNF813Q6ZN06 617 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 FOXL2NBQ6ZUU3 175 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 DCXRQ7Z4W1 244 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 LRRC18Q8N456 261 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 OPALINQ96PE5 141 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 ABHD6Q9BV23 337 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 MROQ9BYG7 248 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 C1orf198Q9H425 327 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 ISG20L2Q9H9L3 353 aaKnown RBP15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 SIAEQ9HAT2 523 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 TMEM38BQ9NVV0 291 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 BABAM2Q9NXR7 383 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 PROCRQ9UNN8 238 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 KLHDC2Q9Y2U9 406 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 A6NHS1 94 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 HSPB2A8KAH6 182 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 PSMD9O00233 223 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 SULT1C4O75897 302 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 SCG5P05408 212 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 OR8G3PP0DMU2 310 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 B4GALT1P15291 398 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 CD36P16671 472 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 SH3BGRP55822 239 aaPredicted RBP15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 BDH1Q02338 343 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 HSPB2Q16082 182 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 C9orf135Q5VTT2 229 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 FBXW9Q5XUX1 488 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 CORO6Q6QEF8 472 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 SPATC1Q76KD6 591 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 VASH1Q7L8A9 365 aaPredicted RBP15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 ZNF649Q9BS31 505 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 ASH2LQ9UBL3 628 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 CYB5R1Q9UHQ9 305 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 PRSS50Q9UI38 385 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 SH3BGRL2Q9UJC5 107 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 GDF2Q9UK05 429 aaPredicted RBP15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 FAM215AQ9Y5M1 114 aa15.09■□□□□ 0.01
CCDC28B-202ENST00000421922 PNMA8CA0A1B0GUJ8 204 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 RPL36A-HNRNPH2H7BZ11 118 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 H2BFMP0C1H6 154 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 TIMP3P35625 211 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 RIDAP52758 137 aaKnown RBP15.08■□□□□ 0
CCDC28B-202ENST00000421922 PCBD1P61457 104 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 ACSM1Q08AH1 577 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 NFATC3Q12968 1075 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 AQP6Q13520 282 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 PCK2Q16822 640 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 TIMM50Q3ZCQ8 353 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 RTL6Q6ICC9 239 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 C3P1Q6ZMU1 363 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 LINGO2Q7L985 606 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 P2RY8Q86VZ1 359 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 ATCAYQ86WG3 371 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 EGFL6Q8IUX8 553 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 HTRA1Q92743 480 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 NABP1Q96AH0 204 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 OR8B4Q96RC9 309 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 ZNF416Q9BWM5 594 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 CENPMQ9NSP4 180 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 ACOXLQ9NUZ1 547 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 MALT1Q9UDY8 824 aa15.08■□□□□ 0
CCDC28B-202ENST00000421922 CACNA1CQ13936 2221 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 FREM1Q5H8C1 2179 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 RPP14O95059 124 aaKnown RBP15.07■□□□□ 0
CCDC28B-202ENST00000421922 PRB1P04280 392 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 CST2P09228 141 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 EDNRAP25101 427 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 MPGP29372 298 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 LIPAP38571 399 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 RGS6P49758 472 aa15.07■□□□□ 0
CCDC28B-202ENST00000421922 ARF1P84077 181 aaKnown RBP15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms