RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 TEX30Q5JUR7 227 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 OR2A2Q6IF42 318 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 OR7E24Q6IFN5 339 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 RPUSD3Q6P087 351 aaKnown RBP5.28□□□□□ -1.56
HMGB3-202ENST00000419110 RPL22L1Q6P5R6 122 aaKnown RBP5.28□□□□□ -1.56
HMGB3-202ENST00000419110 SLC25A47Q6Q0C1 308 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 KLHL24Q6TFL4 600 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 FOXL2NBQ6ZUU3 175 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 SSX6Q7RTT6 188 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 KCTD20Q7Z5Y7 419 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 EGFL6Q8IUX8 553 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 SIAH3Q8IW03 269 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 PHC2Q8IXK0 858 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 C20orf196Q8IYI0 205 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 RBMXL3Q8N7X1 1067 aaKnown RBP5.28□□□□□ -1.56
HMGB3-202ENST00000419110 ZFP41Q8N8Y5 198 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 ZNF485Q8NCK3 441 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 NDNFQ8TB73 568 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 THEM6Q8WUY1 208 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 ZNRF4Q8WWF5 429 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 C11orf40Q8WZ69 217 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 RPL3LQ92901 407 aaKnown RBP5.28□□□□□ -1.56
HMGB3-202ENST00000419110 EXTL1Q92935 676 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 MCHR2Q969V1 340 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 PELI1Q96FA3 418 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 WDYHV1Q96HA8 205 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 GMPPAQ96IJ6 420 aaPredicted RBP5.28□□□□□ -1.56
HMGB3-202ENST00000419110 KCTD7Q96MP8 289 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 OR8B4Q96RC9 309 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 TMED9Q9BVK6 235 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 CDADC1Q9BWV3 514 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 MROQ9BYG7 248 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 LINC00470Q9BZP3 86 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 DCSTAMPQ9H295 470 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 C1orf198Q9H425 327 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 SEC61A2Q9H9S3 476 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 POLE4Q9NR33 117 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 GLRX2Q9NS18 164 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 PARPBPQ9NWS1 579 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 CLCF1Q9UBD9 225 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 FOXD3Q9UJU5 478 aaPredicted RBP5.28□□□□□ -1.56
HMGB3-202ENST00000419110 GTF2A1LQ9UNN4 478 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 GSTK1Q9Y2Q3 226 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 KLHDC2Q9Y2U9 406 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 EMC9Q9Y3B6 208 aa5.28□□□□□ -1.56
HMGB3-202ENST00000419110 A0A087WV48 116 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 IGKV1D-43A0A0B4J1Z2 117 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 TRBV2A0A0J9YWF9 115 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 TMEM212A6NML5 194 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 ZNF879B4DU55 563 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 LOC110117498-PIK3R3F6TDL0 507 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 ZNF593O00488 134 aaPredicted RBP5.27□□□□□ -1.57
HMGB3-202ENST00000419110 GABRPO00591 440 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 DHHO43323 396 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 WDR1O75083 606 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 SS18L1O75177 396 aaPredicted RBP5.27□□□□□ -1.57
HMGB3-202ENST00000419110 ZNF254O75437 659 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 RPP14O95059 124 aaKnown RBP5.27□□□□□ -1.57
HMGB3-202ENST00000419110 ATE1O95260 518 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 ABHD16AO95870 558 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 GPANK1O95872 356 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 LALBAP00709 142 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 PDGFAP04085 211 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 CD1AP06126 327 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 H2BFMP0C1H6 154 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 UBCP0CG48 685 aaKnown RBP5.27□□□□□ -1.57
HMGB3-202ENST00000419110 ABOP16442 354 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 ALOX5APP20292 161 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 NPR2P20594 1047 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 GALP22466 123 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 NR4A1P22736 598 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 RPS27P42677 84 aaKnown RBP5.27□□□□□ -1.57
HMGB3-202ENST00000419110 PCBD1P61457 104 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 VBP1P61758 197 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 LSM6P62312 80 aaKnown RBP5.27□□□□□ -1.57
HMGB3-202ENST00000419110 GRB2P62993 217 aaKnown RBP5.27□□□□□ -1.57
HMGB3-202ENST00000419110 TUBA1BP68363 451 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 MRPS34P82930 218 aaKnown RBP5.27□□□□□ -1.57
HMGB3-202ENST00000419110 ROM1Q03395 351 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 SLC3A1Q07837 685 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 DBPQ10586 325 aaPredicted RBP5.27□□□□□ -1.57
HMGB3-202ENST00000419110 SPCS2Q15005 226 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 RAB35Q15286 201 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 TAF13Q15543 124 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 KCNMB1Q16558 191 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 HIST3H3Q16695 136 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 PCK2Q16822 640 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 DGUOKQ16854 277 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 ACSF3Q4G176 576 aaPredicted RBP5.27□□□□□ -1.57
HMGB3-202ENST00000419110 BCL2L15Q5TBC7 163 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 PAMR1Q6UXH9 720 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 LRRN1Q6UXK5 716 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 TUBA1AQ71U36 451 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 DCXRQ7Z4W1 244 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 CD163Q86VB7 1156 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 ATCAYQ86WG3 371 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 LINC00346Q8IVM7 164 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 ZNF100Q8IYN0 542 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 ZNF679Q8IYX0 411 aa5.27□□□□□ -1.57
HMGB3-202ENST00000419110 MS4A15Q8N5U1 240 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 215.3 ms