RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 TOMM34Q15785 309 aaPredicted RBP13.28□□□□□ -0.28
USP4-203ENST00000415188 ACKR1Q16570 336 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 ELFN2Q5R3F8 820 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 HES5Q5TA89 166 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 FAM69BQ5VUD6 431 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 CD276Q5ZPR3 534 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 FAM205BPQ63HN1 556 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 SLC18B1Q6NT16 456 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 SYT9Q86SS6 491 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 LRRTM1Q86UE6 522 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 ADGRG3Q86Y34 549 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 PM20D2Q8IYS1 436 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 SLC25A38Q96DW6 304 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 C4orf45Q96LM5 186 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 OR8B4Q96RC9 309 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 KLHDC3Q9BQ90 382 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 TMEM246Q9BRR3 403 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 CACNG6Q9BXT2 260 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 SLC7A5P2Q9GIP4 190 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 GALNT9Q9HCQ5 603 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 ANKRD10Q9NXR5 420 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 STMN3Q9NZ72 180 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 KLHL9Q9P2J3 617 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 CTSFQ9UBX1 484 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 SEC16AO15027 2179 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 UBR5O95071 2799 aaPredicted RBP13.27□□□□□ -0.28
USP4-203ENST00000415188 A0A1B0GVC2 190 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 A6NIN4 97 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 H7C1C5 153 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 PLPP3O14495 311 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 KRT33AO76009 404 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 CRABP1P29762 137 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 MAP2K6P52564 334 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 ART1P52961 327 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 LCN6P62502 163 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 ROM1Q03395 351 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 SLC17A1Q14916 467 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 IGFBP7Q16270 282 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 KCTD18Q6PI47 426 aaPredicted RBP13.27□□□□□ -0.29
USP4-203ENST00000415188 DNM1P34Q6PK57 102 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 LANCL3Q6ZV70 420 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 DPY19L4Q7Z388 723 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 ANKRD37Q7Z713 158 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 ZNF227Q86WZ6 799 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 PRSS58Q8IYP2 241 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 ZNF433Q8N7K0 673 aaPredicted RBP13.27□□□□□ -0.29
USP4-203ENST00000415188 ZNF676Q8N7Q3 588 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 OR8K3Q8NH51 312 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 STT3BQ8TCJ2 826 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 RNF138Q8WVD3 245 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 MIB2Q96AX9 1013 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 HAVCR1Q96D42 359 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 GPR87Q9BY21 358 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 GHITMQ9H3K2 345 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 LIN7BQ9HAP6 207 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 NUDT15Q9NV35 164 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 CLEC4AQ9UMR7 237 aa13.27□□□□□ -0.29
USP4-203ENST00000415188 FARSAQ9Y285 508 aaKnown RBP13.27□□□□□ -0.29
USP4-203ENST00000415188 MRPS7Q9Y2R9 242 aaKnown RBP13.27□□□□□ -0.29
USP4-203ENST00000415188 A0A0A6YYJ9 748 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 IGLV1-36A0A0B4J1U3 117 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 C11orf98E9PRG8 122 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 MKRN2OSH3BPM6 223 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 PSMD9O00233 223 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 MEN1O00255 615 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 ADAM10O14672 748 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 PDGFAP04085 211 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 H2AFB2P0C5Z0 115 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 ATXN8OSP0DMR3 200 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 RCVRNP35243 200 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 GDNFP39905 211 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 APOBEC1P41238 236 aaKnown RBP13.26□□□□□ -0.29
USP4-203ENST00000415188 RPS15P62841 145 aaKnown RBP13.26□□□□□ -0.29
USP4-203ENST00000415188 C17orf67Q0P5P2 114 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 CHAF1BQ13112 559 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 SNTB2Q13425 540 aaKnown RBP13.26□□□□□ -0.29
USP4-203ENST00000415188 BCL2L15Q5TBC7 163 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 LINGO2Q7L985 606 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 FGD2Q7Z6J4 655 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 ZNF679Q8IYX0 411 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 DND1Q8IYX4 353 aaKnown RBP13.26□□□□□ -0.29
USP4-203ENST00000415188 DTX3Q8N9I9 347 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 NFAM1Q8NET5 270 aaPredicted RBP13.26□□□□□ -0.29
USP4-203ENST00000415188 OR56B4Q8NH76 319 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 RNF128Q8TEB7 428 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 THEM6Q8WUY1 208 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 HSD17B8Q92506 261 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 SLC25A36Q96CQ1 311 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 HYLS1Q96M11 299 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 BEX2Q9BXY8 128 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 TSPAN10Q9H1Z9 355 aaPredicted RBP13.26□□□□□ -0.29
USP4-203ENST00000415188 SLC22A11Q9NSA0 550 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 OR5V1Q9UGF6 321 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 FOXJ3Q9UPW0 622 aa13.26□□□□□ -0.29
USP4-203ENST00000415188 NBASA2RRP1 2371 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 ANXA2P2A6NMY6 339 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 ACOT7O00154 380 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 ZNF208O43345 1280 aa13.25□□□□□ -0.29
USP4-203ENST00000415188 PRAF2O60831 178 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms