RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 FNDC9Q8TBE3 224 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 HAVCR2Q8TDQ0 301 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 CHAC2Q8WUX2 184 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 RASD2Q96D21 266 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 PGLYRP3Q96LB9 341 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 UCN2Q96RP3 112 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 SOSTQ9BQB4 213 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 NAA11Q9BSU3 229 aaPredicted RBP11.92□□□□□ -0.5
LIMS1-204ENST00000409441 PRRG4Q9BZD6 226 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 TP63Q9H3D4 680 aaPredicted RBP11.92□□□□□ -0.5
LIMS1-204ENST00000409441 CALHM2Q9HA72 323 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 C14orf119Q9NWQ9 140 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 TINAGQ9UJW2 476 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 MCTS1Q9ULC4 181 aaKnown RBP11.92□□□□□ -0.5
LIMS1-204ENST00000409441 SHANK1Q9Y566 2161 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 RP1L1Q8IWN7 2480 aaPredicted RBP11.92□□□□□ -0.5
LIMS1-204ENST00000409441 GTF3C1Q12789 2109 aa11.92□□□□□ -0.5
LIMS1-204ENST00000409441 SPENQ96T58 3664 aaKnown RBP11.91□□□□□ -0.5
LIMS1-204ENST00000409441 FAM208BQ5VWN6 2430 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 TEX13CA0A0J9YWL9 993 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 SHISA3A0PJX4 238 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 SLC22A20A6NK97 555 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 ZNF814B7Z6K7 855 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 BOLA2-SMG1P6H3BVE0 249 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 TMCC2O75069 709 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 TGM6O95932 706 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 PYCR1P32322 319 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 CASP6P55212 293 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 CAV3P56539 151 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 SLC3A1Q07837 685 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 CDK5R1Q15078 307 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 NSUN5P2Q63ZY6 315 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 CCBE1Q6UXH8 406 aaPredicted RBP11.91□□□□□ -0.5
LIMS1-204ENST00000409441 RPTNQ6XPR3 784 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 SSX6Q7RTT6 188 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 OR5J2Q8NH18 312 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 ZNF417Q8TAU3 575 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 SNX33Q8WV41 574 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 PHYHIPQ92561 330 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 SMIM19Q96E16 107 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 TXNDC15Q96J42 360 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 Q96M85 177 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 ZNF587Q96SQ5 575 aaPredicted RBP11.91□□□□□ -0.5
LIMS1-204ENST00000409441 MNTQ99583 582 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 MRPL39Q9NYK5 338 aaKnown RBP11.91□□□□□ -0.5
LIMS1-204ENST00000409441 COMMD3Q9UBI1 195 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 SH3BGRL2Q9UJC5 107 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 TBC1D24Q9ULP9 559 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 B3GALT5Q9Y2C3 310 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 GRIP1Q9Y3R0 1128 aa11.91□□□□□ -0.5
LIMS1-204ENST00000409441 TRGV8A0A0C4DH27 118 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 SMAD9O15198 467 aaKnown RBP11.9□□□□□ -0.5
LIMS1-204ENST00000409441 GPRIN2O60269 458 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 FZD7O75084 574 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 AQP8O94778 261 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 RENP00797 406 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 SPNP16150 400 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 NAA10P41227 235 aaPredicted RBP11.9□□□□□ -0.5
LIMS1-204ENST00000409441 CDKN2AP42771 156 aaKnown RBP11.9□□□□□ -0.5
LIMS1-204ENST00000409441 EVX1P49640 407 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 RPL18Q07020 188 aaKnown RBP11.9□□□□□ -0.5
LIMS1-204ENST00000409441 MRPL28Q13084 256 aaKnown RBP11.9□□□□□ -0.5
LIMS1-204ENST00000409441 ASAH1Q13510 395 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 INSL4Q14641 139 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 ZNF239Q16600 458 aaKnown RBP11.9□□□□□ -0.5
LIMS1-204ENST00000409441 EIF2S3LQ2VIR3 472 aaKnown RBP11.9□□□□□ -0.5
LIMS1-204ENST00000409441 ZMAT1Q5H9K5 638 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 C1orf185Q5T7R7 199 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 LINC01590Q5TEZ4 76 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 TMEM225Q6GV28 225 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 FCRLAQ7L513 359 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 SLC16A9Q7RTY1 509 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 KCTD20Q7Z5Y7 419 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 CEACAM19Q7Z692 300 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 SCAIQ8N9R8 606 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 RPS4Y2Q8TD47 263 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 WNT2BQ93097 391 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 PELI1Q96FA3 418 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 SNX18Q96RF0 628 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 TTYH2Q9BSA4 534 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 ALG12Q9BV10 488 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 CHST11Q9NPF2 352 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 CLCF1Q9UBD9 225 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 GRHPRQ9UBQ7 328 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 ZNF175Q9Y473 711 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 FAM215AQ9Y5M1 114 aa11.9□□□□□ -0.5
LIMS1-204ENST00000409441 ZGRF1Q86YA3 2104 aa11.9□□□□□ -0.51
LIMS1-204ENST00000409441 NBASA2RRP1 2371 aa11.9□□□□□ -0.51
LIMS1-204ENST00000409441 TRAV1-2A0A0B4J238 106 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 SMIM30A4D0T7 59 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 ANKRD61A6NGH8 418 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 AQP7P3A6NL99 342 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 MS4A18H0YCH9 400 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 PLPP3O14495 311 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 HPGDSO60760 199 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 RAMP1O60894 148 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 GATBO75879 557 aaKnown RBP11.89□□□□□ -0.51
LIMS1-204ENST00000409441 OR6A2O95222 327 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 GNLYP22749 145 aa11.89□□□□□ -0.51
LIMS1-204ENST00000409441 GDI2P50395 445 aaKnown RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms