RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ZNF283Q8N7M2 679 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 AP1S3Q96PC3 154 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 SPACA5Q96QH8 159 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 C19orf43Q9BQ61 176 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 POTEKPQ9BYX7 375 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 ISYNA1Q9NPH2 558 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 TIMM8BQ9Y5J9 83 aaPredicted RBP10.87□□□□□ -0.67
HMGB1-206ENST00000405805 PTPRDP23468 1912 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 AQP7O14520 342 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 CD3DP04234 171 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 OR13C7P0DN81 318 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 S1PR1P21453 382 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 NTSR1P30989 418 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 RFC3P40938 356 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 OR3A2P47893 321 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 TAS2R20P59543 309 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 ZNF85Q03923 595 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 MARCH3Q86UD3 253 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 LINC00346Q8IVM7 164 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 TAAR8Q969N4 342 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 SLC25A44Q96H78 314 aaPredicted RBP10.87□□□□□ -0.67
HMGB1-206ENST00000405805 LINC00615Q96LM1 132 aaPredicted RBP10.87□□□□□ -0.67
HMGB1-206ENST00000405805 PBX4Q9BYU1 374 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 PLEKHA1Q9HB21 404 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 TCF21O43680 179 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 HLA-AP01891 365 aaKnown RBP10.87□□□□□ -0.67
HMGB1-206ENST00000405805 DUSP8Q13202 625 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 PLA1AQ53H76 456 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 RSC1A1Q92681 617 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 NUDT22Q9BRQ3 303 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 OR51M1Q9H341 326 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 FBXO4Q9UKT5 387 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 VDAC3Q9Y277 283 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 C17orf105B2RV13 164 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 HRKO00198 91 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 SLC2A5P22732 501 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 DRD3P35462 400 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 EXOSC6Q5RKV6 272 aaKnown RBP10.87□□□□□ -0.67
HMGB1-206ENST00000405805 TMEM205Q6UW68 189 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 SLC35F3Q8IY50 421 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 RCBTB1Q8NDN9 531 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 WDR89Q96FK6 387 aaPredicted RBP10.87□□□□□ -0.67
HMGB1-206ENST00000405805 RBP7Q96R05 134 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 TPSD1Q9BZJ3 242 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 EPHA6Q9UF33 1036 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 C19orf53Q9UNZ5 99 aaPredicted RBP10.87□□□□□ -0.67
HMGB1-206ENST00000405805 ASXL3Q9C0F0 2248 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 A0A0A6YYH2 397 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 A6NJ64 397 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 TNFP01375 233 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 GLYATL3Q5SZD4 288 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 AGBL4Q5VU57 503 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 CD300LDQ6UXZ3 194 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 OR6V1Q8N148 313 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 BPIFB2Q8N4F0 458 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 OR13C3Q8NGS6 347 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 OR10AC1Q8NH08 325 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 PHB2Q99623 299 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 TIMM29Q9BSF4 260 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 ELOVL1Q9BW60 279 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 INPP5EQ9NRR6 644 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 GDE1Q9NZC3 331 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 ACAD8Q9UKU7 415 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 hCG_1809904A0A1W2PP81 198 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 A0A1W2PR64 198 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 A0A1W2PRV1 198 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 ZNF736B4DX44 427 aaPredicted RBP10.86□□□□□ -0.67
HMGB1-206ENST00000405805 LINC01565O15544 149 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 OR8U9P0C7N5 309 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 NFYBP25208 207 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 SLC6A9P48067 706 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 Q499Y3 187 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 ZPLD1Q8TCW7 415 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 SMIM4Q8WVI0 70 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 FGF14Q92915 247 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 GAREM1Q9H706 876 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 CA10Q9NS85 328 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 THAP10Q9P2Z0 257 aaPredicted RBP10.86□□□□□ -0.67
HMGB1-206ENST00000405805 PCDHB10Q9UN67 800 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 PLPP2O43688 288 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 YIF1AO95070 293 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 RAB4AP20338 218 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 TACR3P29371 465 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 MNX1P50219 401 aaPredicted RBP10.86□□□□□ -0.67
HMGB1-206ENST00000405805 STEAP2Q8NFT2 490 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 RXFP4Q8TDU9 374 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 LMX1AQ8TE12 382 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 NECAB3Q96P71 396 aaPredicted RBP10.86□□□□□ -0.67
HMGB1-206ENST00000405805 G6PC3Q9BUM1 346 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 CRISPLD2Q9H0B8 497 aa10.86□□□□□ -0.67
HMGB1-206ENST00000405805 RANBP2P49792 3224 aaKnown RBP10.86□□□□□ -0.67
HMGB1-206ENST00000405805 BPTFQ12830 3046 aa10.85□□□□□ -0.67
HMGB1-206ENST00000405805 TDRD6O60522 2096 aaKnown RBP10.85□□□□□ -0.67
HMGB1-206ENST00000405805 TCRBV21S2A2A0A5A6 115 aa10.85□□□□□ -0.67
HMGB1-206ENST00000405805 ANKUB1A6NFN9 424 aa10.85□□□□□ -0.67
HMGB1-206ENST00000405805 EFCAB7A8K855 629 aa10.85□□□□□ -0.67
HMGB1-206ENST00000405805 GABARAPH6UMI1 98 aa10.85□□□□□ -0.67
HMGB1-206ENST00000405805 PHYHO14832 338 aa10.85□□□□□ -0.67
HMGB1-206ENST00000405805 THY1P04216 161 aa10.85□□□□□ -0.67
HMGB1-206ENST00000405805 KLK3P07288 261 aaPredicted RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms