RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 TMEM212A6NML5 194 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 P2RY10O00398 339 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 LMX1BO60663 402 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 WDPCPO95876 746 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 CLDN17P56750 224 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 TMEM69Q5SWH9 247 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 ATAD3CQ5T2N8 411 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 OR6N1Q8NGY5 312 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 C11orf40Q8WZ69 217 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 UCN2Q96RP3 112 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 ABRACLQ9P1F3 81 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 CGGBP1Q9UFW8 167 aaPredicted RBP9.95□□□□□ -0.82
TCOF1-203ENST00000394269 B3GALT5Q9Y2C3 310 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 ANKRD11Q6UB99 2663 aaPredicted RBP9.95□□□□□ -0.82
TCOF1-203ENST00000394269 EML6Q6ZMW3 1958 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 A0A0B4J293 547 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 A6NL46 340 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 CENPXA8MT69 81 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 AIPO00170 330 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 KHDRBS3O75525 346 aaKnown RBP9.95□□□□□ -0.82
TCOF1-203ENST00000394269 MAPK3P27361 379 aaPredicted RBP9.95□□□□□ -0.82
TCOF1-203ENST00000394269 STARP49675 285 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 RASGEF1BQ0VAM2 473 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 SNTB2Q13425 540 aaKnown RBP9.95□□□□□ -0.82
TCOF1-203ENST00000394269 DNM1P34Q6PK57 102 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 S100A16Q96FQ6 103 aaKnown RBP9.95□□□□□ -0.82
TCOF1-203ENST00000394269 WDR54Q9H977 334 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 ZMAT3Q9HA38 289 aaKnown RBP9.95□□□□□ -0.82
TCOF1-203ENST00000394269 NEK6Q9HC98 313 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 ALKBH4Q9NXW9 302 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 OR5V1Q9UGF6 321 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 TCFL5Q9UL49 500 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 ALG5Q9Y673 324 aa9.95□□□□□ -0.82
TCOF1-203ENST00000394269 MRPS18BQ9Y676 258 aaKnown RBP9.95□□□□□ -0.82
TCOF1-203ENST00000394269 A6NIZ1 184 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 SMLR1H3BR10 107 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 MSX1P28360 303 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 RAP1BP61224 184 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 RAP1AP62834 184 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 MRPL28Q13084 256 aaKnown RBP9.94□□□□□ -0.82
TCOF1-203ENST00000394269 SF3B4Q15427 424 aaKnown RBP eCLIP9.94□□□□□ -0.826e-6■■□□□ 11.8
TCOF1-203ENST00000394269 ZFP69Q49AA0 526 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 OR10K2Q6IF99 312 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 TMEM53Q6P2H8 277 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.94□□□□□ -0.82
TCOF1-203ENST00000394269 BPHLQ86WA6 291 aaPredicted RBP9.94□□□□□ -0.82
TCOF1-203ENST00000394269 ESX1Q8N693 406 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 TEX19Q8NA77 164 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 OR13C3Q8NGS6 347 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 OR52N5Q8NH56 324 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 SLC25A44Q96H78 314 aaPredicted RBP9.94□□□□□ -0.82
TCOF1-203ENST00000394269 IMMP1LQ96LU5 166 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 VSX1Q9NZR4 365 aaPredicted RBP9.94□□□□□ -0.82
TCOF1-203ENST00000394269 ASH2LQ9UBL3 628 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 DMXL2Q8TDJ6 3036 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 ENPP1P22413 925 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 GUCA1AP43080 201 aaPredicted RBP9.94□□□□□ -0.82
TCOF1-203ENST00000394269 AGFG1P52594 562 aaKnown RBP9.94□□□□□ -0.82
TCOF1-203ENST00000394269 TRA2AQ13595 282 aaKnown RBP eCLIP9.94□□□□□ -0.82
TCOF1-203ENST00000394269 EXT1Q16394 746 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 C6orf15Q6UXA7 325 aaPredicted RBP9.94□□□□□ -0.82
TCOF1-203ENST00000394269 LRRC18Q8N456 261 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 OR14L1PQ8NHC6 308 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 STRADBQ9C0K7 418 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 PPIEQ9UNP9 301 aaKnown RBP9.94□□□□□ -0.82
TCOF1-203ENST00000394269 CACNG2Q9Y698 323 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 A0A0G2JMM0 328 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 A0A1W2PPB8 328 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 A0A1W2PRS3 328 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 KIR3DP1A8MWS1 328 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 CD2P06729 351 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 QDPRP09417 244 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 CDK2P24941 298 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 IFITM2Q01629 132 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 C5orf46Q6UWT4 87 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 UNQ9370/PRO34162Q6UXP9 181 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 SLC26A10Q8NG04 563 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 OR51A2Q8NGJ7 313 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 OR52I2Q8NH67 350 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 CT55Q8WUE5 264 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 RBM24Q9BX46 236 aaKnown RBP9.94□□□□□ -0.82
TCOF1-203ENST00000394269 CACNG6Q9BXT2 260 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 TAS2R4Q9NYW5 299 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 RCE1Q9Y256 329 aa9.94□□□□□ -0.82
TCOF1-203ENST00000394269 TNFSF11O14788 317 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 PHYHO14832 338 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 ZNF208O43345 1280 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 ORC5O43913 435 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 UBL3O95164 117 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 GDNFP39905 211 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 ART1P52961 327 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 SUMO3P55854 103 aaPredicted RBP9.93□□□□□ -0.82
TCOF1-203ENST00000394269 RSPO4Q2I0M5 234 aaPredicted RBP9.93□□□□□ -0.82
TCOF1-203ENST00000394269 SPINK14Q6IE38 97 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 KLHL24Q6TFL4 600 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 OR2AJ1Q8NGZ0 328 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 OR6F1Q8NGZ6 308 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 ASB17Q8WXJ9 295 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 SPACA5Q96QH8 159 aa9.93□□□□□ -0.82
TCOF1-203ENST00000394269 KCNK17Q96T54 332 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms