RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 ITGA3P26006 1051 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 ADH6P28332 368 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 TMPRSS11FQ6ZWK6 438 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 GALNTL5Q7Z4T8 443 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 OR6S1Q8NH40 331 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 NT5CQ8TCD5 201 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 TMEM74BQ9NUR3 256 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 UQCC1Q9NVA1 299 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 SLC22A7Q9Y694 548 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 FANCMQ8IYD8 2048 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 KLF8O95600 359 aaPredicted RBP12.53□□□□□ -0.4
SDC1-202ENST00000381150 ITGA5P08648 1049 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 TLX1P31314 330 aaPredicted RBP12.53□□□□□ -0.4
SDC1-202ENST00000381150 DIO1P49895 249 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 NR0B1P51843 470 aaKnown RBP12.53□□□□□ -0.4
SDC1-202ENST00000381150 SPOCK1Q08629 439 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 ILF3Q12906 894 aaKnown RBP eCLIP12.53□□□□□ -0.4
SDC1-202ENST00000381150 ALKBH1Q13686 389 aaKnown RBP12.53□□□□□ -0.4
SDC1-202ENST00000381150 RAB11BQ15907 218 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 NCMAPQ5T1S8 102 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 POMGNT2Q8NAT1 580 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 TSACCQ96A04 125 aaPredicted RBP12.53□□□□□ -0.4
SDC1-202ENST00000381150 OR2A5Q96R48 311 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 MSRAQ9UJ68 235 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 KLF2Q9Y5W3 355 aaPredicted RBP12.53□□□□□ -0.4
SDC1-202ENST00000381150 COL4A2P08572 1712 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 TNFSF14O43557 240 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 CDC40O60508 579 aaKnown RBP eCLIP12.53□□□□□ -0.44e-6■■■■□ 23.1
SDC1-202ENST00000381150 CTSVO60911 334 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 SNAPC5O75971 98 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 ZNF432O94892 652 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 OR2F2O95006 317 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 PLGP00747 810 aaPredicted RBP12.53□□□□□ -0.4
SDC1-202ENST00000381150 CALCBP10092 127 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 CTHP32929 405 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 PNLIPRP2P54317 469 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 PPP1R1AQ13522 171 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 OR2F1Q13607 317 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 NFATC4Q14934 902 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 GLYATL3Q5SZD4 288 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 ATPAF1Q5TC12 328 aaPredicted RBP12.53□□□□□ -0.4
SDC1-202ENST00000381150 NKAIN2Q5VXU1 208 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 TMPPEQ6ZT21 453 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 OR5T3Q8NGG3 340 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 GAL3ST3Q96A11 431 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 FOXRED1Q96CU9 486 aaPredicted RBP12.53□□□□□ -0.4
SDC1-202ENST00000381150 CMBLQ96DG6 245 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 SMIM3Q9BZL3 60 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 FBRSQ9HAH7 460 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 TNFSF18Q9UNG2 199 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 ARHGEF17Q96PE2 2063 aaPredicted RBP12.53□□□□□ -0.4
SDC1-202ENST00000381150 LRP4O75096 1905 aa12.53□□□□□ -0.4
SDC1-202ENST00000381150 RNF222A6NCQ9 220 aa12.52□□□□□ -0.4
SDC1-202ENST00000381150 C11orf98E9PRG8 122 aa12.52□□□□□ -0.4
SDC1-202ENST00000381150 OR10H2O60403 315 aa12.52□□□□□ -0.4
SDC1-202ENST00000381150 IFNA6P05013 189 aa12.52□□□□□ -0.4
SDC1-202ENST00000381150 MAPK3P27361 379 aaPredicted RBP12.52□□□□□ -0.4
SDC1-202ENST00000381150 RPS15AP62244 130 aaKnown RBP12.52□□□□□ -0.4
SDC1-202ENST00000381150 DUSP8Q13202 625 aa12.52□□□□□ -0.4
SDC1-202ENST00000381150 SLC22A6Q4U2R8 563 aa12.52□□□□□ -0.4
SDC1-202ENST00000381150 ZNF584Q8IVC4 421 aa12.52□□□□□ -0.4
SDC1-202ENST00000381150 GVQW1Q8N7I0 195 aa12.52□□□□□ -0.4
SDC1-202ENST00000381150 CAMKVQ8NCB2 501 aa12.52□□□□□ -0.4
SDC1-202ENST00000381150 C15orf40Q8WUR7 153 aa12.52□□□□□ -0.4
SDC1-202ENST00000381150 AKR1E2Q96JD6 320 aa12.52□□□□□ -0.4
SDC1-202ENST00000381150 MRGPRX1Q96LB2 322 aa12.52□□□□□ -0.4
SDC1-202ENST00000381150 STARD5Q9NSY2 213 aa12.52□□□□□ -0.4
SDC1-202ENST00000381150 MED19A0JLT2 244 aaPredicted RBP12.52□□□□□ -0.41
SDC1-202ENST00000381150 TPT1P13693 172 aaKnown RBP12.52□□□□□ -0.41
SDC1-202ENST00000381150 PTAFRP25105 342 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 TFF2Q03403 129 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 SLC9A3R2Q15599 337 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 RNASE10Q5GAN6 216 aaKnown RBP12.52□□□□□ -0.41
SDC1-202ENST00000381150 TAF8Q7Z7C8 310 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 OR4K17Q8NGC6 315 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 WDR76Q9H967 626 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 PILRAQ9UKJ1 303 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 TMED7Q9Y3B3 224 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 A0A1W2PPE3 182 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 C10orf142B7Z368 130 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 P2RX6O15547 441 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 MED6O75586 246 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 TAS2R19P59542 299 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 CTXN1P60606 82 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 RUNX2Q13950 521 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 INPP5JQ15735 1006 aaPredicted RBP12.52□□□□□ -0.41
SDC1-202ENST00000381150 ARHGAP11BQ3KRB8 267 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 FCRL6Q6DN72 434 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 TTLL10Q6ZVT0 673 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 OR5M8Q8NGP6 311 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 GPR148Q8TDV2 347 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 NAA11Q9BSU3 229 aaPredicted RBP12.52□□□□□ -0.41
SDC1-202ENST00000381150 CST11Q9H112 138 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 RHOFQ9HBH0 211 aa12.52□□□□□ -0.41
SDC1-202ENST00000381150 CHMP1AQ9HD42 196 aaPredicted RBP12.52□□□□□ -0.41
SDC1-202ENST00000381150 hCG_1809904A0A1W2PP81 198 aa12.51□□□□□ -0.41
SDC1-202ENST00000381150 A0A1W2PR64 198 aa12.51□□□□□ -0.41
SDC1-202ENST00000381150 A0A1W2PRV1 198 aa12.51□□□□□ -0.41
SDC1-202ENST00000381150 RAB6AP20340 208 aa12.51□□□□□ -0.41
SDC1-202ENST00000381150 RBM34P42696 430 aaKnown RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms