RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 CNIH3Q8TBE1 160 aa19.35■□□□□ 0.69
SDC3-202ENST00000339394 NANOS1Q8WY41 292 aaKnown RBP19.35■□□□□ 0.69
SDC3-202ENST00000339394 Q96MT0 163 aa19.35■□□□□ 0.69
SDC3-202ENST00000339394 ANKRD60Q9BZ19 345 aa19.35■□□□□ 0.69
SDC3-202ENST00000339394 CLN6Q9NWW5 311 aa19.35■□□□□ 0.69
SDC3-202ENST00000339394 ASH2LQ9UBL3 628 aa19.35■□□□□ 0.69
SDC3-202ENST00000339394 SPTAN1Q13813 2472 aaKnown RBP19.34■□□□□ 0.69
SDC3-202ENST00000339394 UTP20O75691 2785 aaKnown RBP19.34■□□□□ 0.69
SDC3-202ENST00000339394 UBL3O95164 117 aa19.34■□□□□ 0.69
SDC3-202ENST00000339394 WNT11O96014 354 aa19.34■□□□□ 0.69
SDC3-202ENST00000339394 MMP7P09237 267 aaPredicted RBP19.34■□□□□ 0.69
SDC3-202ENST00000339394 RPS27P42677 84 aaKnown RBP19.34■□□□□ 0.69
SDC3-202ENST00000339394 KIR2DL3P43628 341 aa19.34■□□□□ 0.69
SDC3-202ENST00000339394 RAB1AP62820 205 aa19.34■□□□□ 0.69
SDC3-202ENST00000339394 C1QTNF12Q5T7M4 302 aa19.34■□□□□ 0.69
SDC3-202ENST00000339394 THAP5Q7Z6K1 395 aa19.34■□□□□ 0.69
SDC3-202ENST00000339394 ERI1Q8IV48 349 aaKnown RBP19.34■□□□□ 0.69
SDC3-202ENST00000339394 DACH2Q96NX9 599 aa19.34■□□□□ 0.69
SDC3-202ENST00000339394 PSMG3-AS1Q96PY0 264 aa19.34■□□□□ 0.69
SDC3-202ENST00000339394 CDADC1Q9BWV3 514 aa19.34■□□□□ 0.69
SDC3-202ENST00000339394 C1QTNF6Q9BXI9 259 aa19.34■□□□□ 0.69
SDC3-202ENST00000339394 MARCH7Q9H992 704 aa19.34■□□□□ 0.69
SDC3-202ENST00000339394 NOX3Q9HBY0 568 aa19.34■□□□□ 0.69
SDC3-202ENST00000339394 WARS2Q9UGM6 360 aaKnown RBP19.34■□□□□ 0.69
SDC3-202ENST00000339394 CYB5R1Q9UHQ9 305 aa19.34■□□□□ 0.69
SDC3-202ENST00000339394 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP19.34■□□□□ 0.691e-6■■■■□ 24.5
SDC3-202ENST00000339394 C12orf71A8MTZ7 269 aa19.33■□□□□ 0.69
SDC3-202ENST00000339394 ZNF593O00488 134 aaPredicted RBP19.33■□□□□ 0.69
SDC3-202ENST00000339394 PCBD1P61457 104 aa19.33■□□□□ 0.69
SDC3-202ENST00000339394 GSG1Q2KHT4 349 aa19.33■□□□□ 0.69
SDC3-202ENST00000339394 LCN1P1Q5VSP4 162 aa19.33■□□□□ 0.69
SDC3-202ENST00000339394 SEZ6L2Q6UXD5 910 aa19.33■□□□□ 0.69
SDC3-202ENST00000339394 SSX8Q7RTT4 187 aa19.33■□□□□ 0.69
SDC3-202ENST00000339394 DPPA2Q7Z7J5 298 aa19.33■□□□□ 0.69
SDC3-202ENST00000339394 SYT9Q86SS6 491 aa19.33■□□□□ 0.69
SDC3-202ENST00000339394 MDP1Q86V88 176 aa19.33■□□□□ 0.69
SDC3-202ENST00000339394 INTS14Q96SY0 518 aa19.33■□□□□ 0.69
SDC3-202ENST00000339394 HAO2Q9NYQ3 351 aa19.33■□□□□ 0.69
SDC3-202ENST00000339394 CRIM1Q9NZV1 1036 aa19.33■□□□□ 0.69
SDC3-202ENST00000339394 POLR1DQ9Y2S0 133 aa19.33■□□□□ 0.69
SDC3-202ENST00000339394 LHFPL6Q9Y693 200 aa19.33■□□□□ 0.69
SDC3-202ENST00000339394 SELENOFO60613 162 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 PSKH1P11801 424 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 ZNF32P17041 273 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 ENTPD1P49961 510 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 CDK5R2Q13319 367 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 AQP6Q13520 282 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 GGTLC2Q14390 218 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 SMN1Q16637 294 aaKnown RBP19.32■□□□□ 0.68
SDC3-202ENST00000339394 PCK2Q16822 640 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 CORO6Q6QEF8 472 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 WFDC8Q8IUA0 241 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 FBLIM1Q8WUP2 373 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 RNF121Q9H920 327 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 AMBNQ9NP70 447 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 CCNB1IP1Q9NPC3 277 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 NPAP1Q9NZP6 1156 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 KCNG2Q9UJ96 466 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 TIMM10BQ9Y5J6 103 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 USP9YO00507 2555 aaPredicted RBP19.32■□□□□ 0.68
SDC3-202ENST00000339394 HCFC1P51610 2035 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 SNTNA6NMZ2 147 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 MRPL3P09001 348 aaKnown RBP19.32■□□□□ 0.68
SDC3-202ENST00000339394 CBR1P16152 277 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 MYF6P23409 242 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 ARR3P36575 388 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 NAA10P41227 235 aaPredicted RBP19.32■□□□□ 0.68
SDC3-202ENST00000339394 NUDT6P53370 316 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 TMED1Q13445 227 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 TEX30Q5JUR7 227 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 MEX3BQ6ZN04 569 aaKnown RBP19.32■□□□□ 0.68
SDC3-202ENST00000339394 DPY19L4Q7Z388 723 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 LINC00346Q8IVM7 164 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 SMAP2Q8WU79 429 aaPredicted RBP19.32■□□□□ 0.68
SDC3-202ENST00000339394 ZNF75AQ96N20 296 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 WACQ9BTA9 647 aa19.32■□□□□ 0.68
SDC3-202ENST00000339394 RER1O15258 196 aa19.31■□□□□ 0.68
SDC3-202ENST00000339394 TMCC2O75069 709 aa19.31■□□□□ 0.68
SDC3-202ENST00000339394 IGKV3-15P01624 115 aa19.31■□□□□ 0.68
SDC3-202ENST00000339394 SPARCP09486 303 aa19.31■□□□□ 0.68
SDC3-202ENST00000339394 EPXP11678 715 aa19.31■□□□□ 0.68
SDC3-202ENST00000339394 MTNR1AP48039 350 aa19.31■□□□□ 0.68
SDC3-202ENST00000339394 PSG4Q00888 419 aa19.31■□□□□ 0.68
SDC3-202ENST00000339394 LAIR2Q6ISS4 152 aa19.31■□□□□ 0.68
SDC3-202ENST00000339394 SLC18B1Q6NT16 456 aa19.31■□□□□ 0.68
SDC3-202ENST00000339394 OR51G2Q8NGK0 314 aa19.31■□□□□ 0.68
SDC3-202ENST00000339394 OR6N2Q8NGY6 317 aa19.31■□□□□ 0.68
SDC3-202ENST00000339394 SPOCK3Q9BQ16 436 aa19.31■□□□□ 0.68
SDC3-202ENST00000339394 RAB36O95755 333 aa19.3■□□□□ 0.68
SDC3-202ENST00000339394 PAX7P23759 505 aa19.3■□□□□ 0.68
SDC3-202ENST00000339394 ZNF83P51522 516 aa19.3■□□□□ 0.68
SDC3-202ENST00000339394 SP5Q6BEB4 398 aaPredicted RBP19.3■□□□□ 0.68
SDC3-202ENST00000339394 TMEM53Q6P2H8 277 aa19.3■□□□□ 0.68
SDC3-202ENST00000339394 FAM169BQ8N8A8 192 aa19.3■□□□□ 0.68
SDC3-202ENST00000339394 GJC3Q8NFK1 279 aa19.3■□□□□ 0.68
SDC3-202ENST00000339394 CNBD2Q96M20 576 aa19.3■□□□□ 0.68
SDC3-202ENST00000339394 CNN2Q99439 309 aaKnown RBP19.3■□□□□ 0.68
SDC3-202ENST00000339394 OR2H1Q9GZK4 316 aa19.3■□□□□ 0.68
SDC3-202ENST00000339394 ADGRL4Q9HBW9 690 aa19.3■□□□□ 0.68
SDC3-202ENST00000339394 MOV10Q9HCE1 1003 aaKnown RBP19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms