RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 C1QTNF6Q9BXI9 259 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 CHST7Q9NS84 486 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 MRPL16Q9NX20 251 aaKnown RBP7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 JKAMPQ9P055 326 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 GAGE2DQ9UEU5 116 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 CPSF1Q10570 1443 aaKnown RBP7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 NCR2O95944 276 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 SOD3P08294 240 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 IAPPP10997 89 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 RPIAP49247 311 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 ZNF140P52738 457 aaPredicted RBP7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 SUB1P53999 127 aaKnown RBP eCLIP7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 DUSP8Q13202 625 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 SUMO4Q6EEV6 95 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 H2BFWTQ7Z2G1 175 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 TMEM176AQ96HP8 235 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 OR8B2Q96RD0 313 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 MRPL20Q9BYC9 149 aaKnown RBP7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 IL25Q9H293 177 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 MANBALQ9NQG1 85 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 MBNL1Q9NR56 388 aaKnown RBP7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 CYSLTR2Q9NS75 346 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 TAS2R5Q9NYW4 299 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 B3GAT1Q9P2W7 334 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 RCE1Q9Y256 329 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 OR2A25A4D2G3 310 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 MT-CYBP00156 380 aaPredicted RBP7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 CA5AP35218 305 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 MMP21Q8N119 569 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 C5orf17Q8NAS9 161 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 ADAMTS18Q8TE60 1221 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 RBM24Q9BX46 236 aaKnown RBP7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 Q9N2J8 555 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 OSGIN1Q9UJX0 560 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 NXT1Q9UKK6 140 aaKnown RBP7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 LRRC7Q96NW7 1537 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 GM2AP17900 193 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 S100A11P31949 105 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 GALNSP34059 522 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 OPRL1P41146 370 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 INHBEP58166 350 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 HOXA4Q00056 320 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 IKZF1Q13422 519 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 HLA-DRB5Q30154 266 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 PPM1JQ5JR12 505 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 SPANXN5Q5MJ07 72 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 PRAMEF5Q5TYX0 476 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 FAM78BQ5VT40 261 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 PRAMEF6Q5VXH4 476 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 FAM109BQ6ICB4 259 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 OR56B1Q8NGI3 324 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 GPR21Q99679 349 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 GPR52Q9Y2T5 361 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 TMEM184BQ9Y519 407 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 DNASE2O00115 360 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 FRS3O43559 492 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 SSSCA1O60232 199 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 NTSR2O95665 410 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 TFAP2AP05549 437 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 EDDM3BP56851 147 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 SF3B4Q15427 424 aaKnown RBP eCLIP7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 MEDAGQ5VYS4 303 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 PARM1Q6UWI2 310 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 GDF7Q7Z4P5 450 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 DEFB106AQ8N104 65 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 LGI3Q8N145 548 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 ARHGEF39Q8N4T4 335 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 PLPP7Q8NBV4 271 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 NPEPL1Q8NDH3 523 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 OR6S1Q8NH40 331 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 SPTSSAQ969W0 71 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 GALMQ96C23 342 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 TMEM47Q9BQJ4 181 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 GPR174Q9BXC1 333 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 SLC25A22Q9H936 323 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 TMEM38BQ9NVV0 291 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 CDC14AQ9UNH5 594 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 INSL6Q9Y581 213 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 STBD1O95210 358 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 HOXB1P14653 301 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 CSNK1A1P48729 337 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 PRLHRP49683 370 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 WNT7BP56706 349 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 RPL30P62888 115 aaKnown RBP7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 PRB3Q04118 309 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 MEF2CQ06413 473 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 ASAH1Q13510 395 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 DRAM2Q6UX65 266 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 CLEC4CQ8WTT0 213 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 HSD17B8Q92506 261 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 LHX4Q969G2 390 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 MOB3AQ96BX8 217 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 SEC11CQ9BY50 192 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 DMAC2Q9NW81 257 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 PTPRJQ12913 1337 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 KLF4O43474 513 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 SFTA3P0C7M3 94 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 GZMBP10144 247 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 SSTR5P35346 364 aa7.04□□□□□ -1.28
LIMCH1-201ENST00000313860 GPR4P46093 362 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms