RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 FAM157AC9JC47 383 aa16.65■□□□□ 0.26
LIME1-201ENST00000309546 XKRYO14609 159 aa16.65■□□□□ 0.26
LIME1-201ENST00000309546 IGHV3-13P01766 116 aa16.65■□□□□ 0.26
LIME1-201ENST00000309546 H1F0P07305 194 aaKnown RBP16.65■□□□□ 0.26
LIME1-201ENST00000309546 CD14P08571 375 aa16.65■□□□□ 0.26
LIME1-201ENST00000309546 THBS2P35442 1172 aa16.65■□□□□ 0.26
LIME1-201ENST00000309546 DVL1P1P54792 670 aaPredicted RBP16.65■□□□□ 0.26
LIME1-201ENST00000309546 ENDOGQ14249 297 aaKnown RBP16.65■□□□□ 0.26
LIME1-201ENST00000309546 ZBED5Q49AG3 693 aa16.65■□□□□ 0.26
LIME1-201ENST00000309546 AVPI1Q5T686 147 aa16.65■□□□□ 0.26
LIME1-201ENST00000309546 FOXL2NBQ6ZUU3 175 aa16.65■□□□□ 0.26
LIME1-201ENST00000309546 TMPRSS11FQ6ZWK6 438 aa16.65■□□□□ 0.26
LIME1-201ENST00000309546 GLCCI1Q86VQ1 547 aa16.65■□□□□ 0.26
LIME1-201ENST00000309546 C1orf159Q96HA4 380 aa16.65■□□□□ 0.26
LIME1-201ENST00000309546 Q96M85 177 aa16.65■□□□□ 0.26
LIME1-201ENST00000309546 OR2J1Q9GZK6 312 aa16.65■□□□□ 0.26
LIME1-201ENST00000309546 ANKRD19PQ9H560 264 aa16.65■□□□□ 0.26
LIME1-201ENST00000309546 POLE4Q9NR33 117 aa16.65■□□□□ 0.26
LIME1-201ENST00000309546 ADA2Q9NZK5 511 aa16.65■□□□□ 0.26
LIME1-201ENST00000309546 TMEM5Q9Y2B1 443 aa16.65■□□□□ 0.26
LIME1-201ENST00000309546 FAM32AQ9Y421 112 aaKnown RBP16.65■□□□□ 0.26
LIME1-201ENST00000309546 V9GYQ6 96 aa16.65■□□□□ 0.26
LIME1-201ENST00000309546 IGHV1-69-2A0A0G2JMI3 117 aa16.64■□□□□ 0.25
LIME1-201ENST00000309546 PLSCR5A0PG75 271 aa16.64■□□□□ 0.25
LIME1-201ENST00000309546 C12orf71A8MTZ7 269 aa16.64■□□□□ 0.25
LIME1-201ENST00000309546 SPRY3O43610 288 aa16.64■□□□□ 0.25
LIME1-201ENST00000309546 TFP02787 698 aa16.64■□□□□ 0.25
LIME1-201ENST00000309546 PCMT1P22061 227 aa16.64■□□□□ 0.25
LIME1-201ENST00000309546 ZNF81P51508 661 aa16.64■□□□□ 0.25
LIME1-201ENST00000309546 PPP1CBP62140 327 aa16.64■□□□□ 0.25
LIME1-201ENST00000309546 MVKQ03426 396 aa16.64■□□□□ 0.25
LIME1-201ENST00000309546 MESTQ5EB52 335 aa16.64■□□□□ 0.25
LIME1-201ENST00000309546 GLYATQ6IB77 296 aa16.64■□□□□ 0.25
LIME1-201ENST00000309546 USP51Q70EK9 711 aa16.64■□□□□ 0.25
LIME1-201ENST00000309546 TSEN54Q7Z6J9 526 aaKnown RBP16.64■□□□□ 0.25
LIME1-201ENST00000309546 RNF148Q8N7C7 305 aa16.64■□□□□ 0.25
LIME1-201ENST00000309546 SLC7A13Q8TCU3 470 aa16.64■□□□□ 0.25
LIME1-201ENST00000309546 MARS2Q96GW9 593 aaKnown RBP16.64■□□□□ 0.25
LIME1-201ENST00000309546 RACGAP1Q9H0H5 632 aa16.64■□□□□ 0.25
LIME1-201ENST00000309546 MYLK2Q9H1R3 596 aa16.64■□□□□ 0.25
LIME1-201ENST00000309546 RERGLQ9H628 205 aa16.64■□□□□ 0.25
LIME1-201ENST00000309546 SAP30LQ9HAJ7 183 aa16.64■□□□□ 0.25
LIME1-201ENST00000309546 SPAG4Q9NPE6 437 aa16.64■□□□□ 0.25
LIME1-201ENST00000309546 NKIRAS2Q9NYR9 191 aa16.64■□□□□ 0.25
LIME1-201ENST00000309546 TEX13CA0A0J9YWL9 993 aa16.63■□□□□ 0.25
LIME1-201ENST00000309546 GMNNO75496 209 aa16.63■□□□□ 0.25
LIME1-201ENST00000309546 DIRAS1O95057 198 aa16.63■□□□□ 0.25
LIME1-201ENST00000309546 SCG5P05408 212 aa16.63■□□□□ 0.25
LIME1-201ENST00000309546 GAAP10253 952 aa16.63■□□□□ 0.25
LIME1-201ENST00000309546 ZNF26P17031 533 aaPredicted RBP16.63■□□□□ 0.25
LIME1-201ENST00000309546 TEKQ02763 1124 aa16.63■□□□□ 0.25
LIME1-201ENST00000309546 KLF14Q8TD94 323 aaPredicted RBP16.63■□□□□ 0.25
LIME1-201ENST00000309546 RASD2Q96D21 266 aa16.63■□□□□ 0.25
LIME1-201ENST00000309546 IL20RAQ9UHF4 553 aa16.63■□□□□ 0.25
LIME1-201ENST00000309546 NDRG4Q9ULP0 352 aaKnown RBP16.63■□□□□ 0.25
LIME1-201ENST00000309546 CACNG2Q9Y698 323 aa16.63■□□□□ 0.25
LIME1-201ENST00000309546 DOK2O60496 412 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 NDUFB2O95178 105 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 NGFP01138 241 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 IGHV1-46P01743 117 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 MSMBP08118 114 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 PRDX6P30041 224 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 CRYBB2P43320 205 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 ARHGDIAP52565 204 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 SCRN3Q0VDG4 424 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 KRR1Q13601 381 aaKnown RBP16.62■□□□□ 0.25
LIME1-201ENST00000309546 TMEM255AQ5JRV8 349 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 MBNL2Q5VZF2 373 aaKnown RBP16.62■□□□□ 0.25
LIME1-201ENST00000309546 FAM122BQ7Z309 247 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 FAM86B1Q8N7N1 296 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 FAM156AQ8NDB6 213 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 OR51F2Q8NH61 342 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 TMEM186Q96B77 213 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 RSRC1Q96IZ7 334 aaKnown RBP16.62■□□□□ 0.25
LIME1-201ENST00000309546 C4orf45Q96LM5 186 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 C19orf24Q9BVV8 132 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 NSRP1Q9H0G5 558 aaKnown RBP16.62■□□□□ 0.25
LIME1-201ENST00000309546 ELOVL3Q9HB03 270 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 HIF1ANQ9NWT6 349 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 NDUFAF4Q9P032 175 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 SAMD4AQ9UPU9 718 aaKnown RBP16.62■□□□□ 0.25
LIME1-201ENST00000309546 AURKCQ9UQB9 309 aa16.62■□□□□ 0.25
LIME1-201ENST00000309546 TRBV4-1A0A0J9YWV2 114 aa16.61■□□□□ 0.25
LIME1-201ENST00000309546 A0A1W2PRQ8 180 aa16.61■□□□□ 0.25
LIME1-201ENST00000309546 PRSS37A4D1T9 235 aa16.61■□□□□ 0.25
LIME1-201ENST00000309546 CLDN25C9JDP6 229 aa16.61■□□□□ 0.25
LIME1-201ENST00000309546 ABHD16AO95870 558 aa16.61■□□□□ 0.25
LIME1-201ENST00000309546 CTLA4P16410 223 aa16.61■□□□□ 0.25
LIME1-201ENST00000309546 RHCEP18577 417 aa16.61■□□□□ 0.25
LIME1-201ENST00000309546 HTR5AP47898 357 aa16.61■□□□□ 0.25
LIME1-201ENST00000309546 LIMS1P48059 325 aa16.61■□□□□ 0.25
LIME1-201ENST00000309546 MMP15P51511 669 aa16.61■□□□□ 0.25
LIME1-201ENST00000309546 DGCR6Q14129 220 aa16.61■□□□□ 0.25
LIME1-201ENST00000309546 HFEQ30201 348 aa16.61■□□□□ 0.25
LIME1-201ENST00000309546 OTPQ5XKR4 325 aa16.61■□□□□ 0.25
LIME1-201ENST00000309546 ARL9Q6T311 187 aa16.61■□□□□ 0.25
LIME1-201ENST00000309546 SYT9Q86SS6 491 aa16.61■□□□□ 0.25
LIME1-201ENST00000309546 OR52J3Q8NH60 311 aa16.61■□□□□ 0.25
LIME1-201ENST00000309546 SYT4Q9H2B2 425 aa16.61■□□□□ 0.25
LIME1-201ENST00000309546 KRCC1Q9NPI7 259 aaPredicted RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms