RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 HSD17B6O14756 317 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 C17orf67Q0P5P2 114 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 HAGHQ16775 308 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 TCTN3Q6NUS6 607 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 POMT2Q9UKY4 750 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 PADI1Q9ULC6 663 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 NTNG1Q9Y2I2 539 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 COA3Q9Y2R0 106 aaPredicted RBP15.89■□□□□ 0.13
SYNPO-201ENST00000307662 LOC107986453A0A1B0GWG9 222 aa15.88■□□□□ 0.13
SYNPO-201ENST00000307662 RPL12P30050 165 aaKnown RBP15.88■□□□□ 0.13
SYNPO-201ENST00000307662 OR2A14Q96R47 310 aa15.88■□□□□ 0.13
SYNPO-201ENST00000307662 HCSTQ9UBK5 93 aa15.88■□□□□ 0.13
SYNPO-201ENST00000307662 ACSM4P0C7M7 580 aa15.88■□□□□ 0.13
SYNPO-201ENST00000307662 RD3LP0DJH9 198 aa15.88■□□□□ 0.13
SYNPO-201ENST00000307662 MMP15P51511 669 aa15.88■□□□□ 0.13
SYNPO-201ENST00000307662 RPUSD3Q6P087 351 aaKnown RBP15.88■□□□□ 0.13
SYNPO-201ENST00000307662 RBM38Q9H0Z9 239 aaKnown RBP15.88■□□□□ 0.13
SYNPO-201ENST00000307662 MED9Q9NWA0 146 aa15.88■□□□□ 0.13
SYNPO-201ENST00000307662 TMEM184BQ9Y519 407 aaPredicted RBP15.88■□□□□ 0.13
SYNPO-201ENST00000307662 TJP1Q07157 1748 aa15.88■□□□□ 0.13
SYNPO-201ENST00000307662 F6UZH7 168 aa15.88■□□□□ 0.13
SYNPO-201ENST00000307662 ZNF354AO60765 605 aaPredicted RBP15.88■□□□□ 0.13
SYNPO-201ENST00000307662 ELLP55199 621 aaPredicted RBP15.88■□□□□ 0.13
SYNPO-201ENST00000307662 EEF1A2Q05639 463 aaKnown RBP15.88■□□□□ 0.13
SYNPO-201ENST00000307662 CDK5R1Q15078 307 aa15.88■□□□□ 0.13
SYNPO-201ENST00000307662 OR4N2Q8NGD1 307 aa15.88■□□□□ 0.13
SYNPO-201ENST00000307662 SMIM4Q8WVI0 70 aa15.88■□□□□ 0.13
SYNPO-201ENST00000307662 PIGLQ9Y2B2 252 aa15.88■□□□□ 0.13
SYNPO-201ENST00000307662 NUMBLQ9Y6R0 609 aa15.88■□□□□ 0.13
SYNPO-201ENST00000307662 CROCCQ5TZA2 2017 aa15.88■□□□□ 0.13
SYNPO-201ENST00000307662 BTBD17A6NE02 478 aa15.88■□□□□ 0.13
SYNPO-201ENST00000307662 CD3DP04234 171 aa15.88■□□□□ 0.13
SYNPO-201ENST00000307662 TNFSF4P23510 183 aa15.88■□□□□ 0.13
SYNPO-201ENST00000307662 LIM2P55344 173 aa15.88■□□□□ 0.13
SYNPO-201ENST00000307662 AKAP11Q9UKA4 1901 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 OR6C68A6NDL8 312 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 TARM1B6A8C7 271 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 CA3P07451 260 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 C1orf140Q5VVS0 124 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 AAED1Q7RTV5 226 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 FAM185AQ8N0U4 392 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 SLC35A4Q96G79 324 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 MYH9P35579 1960 aaKnown RBP15.87■□□□□ 0.13
SYNPO-201ENST00000307662 CYB5BO43169 146 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 H3F3AP84243 136 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 SLC10A1Q14973 349 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 UQCC3Q6UW78 93 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 FAM3CQ92520 227 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 TOX2Q96NM4 488 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 LYSMD1Q96S90 227 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 CDCP1Q9H5V8 836 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 PLEKHA2Q9HB19 425 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 ZBTB32Q9Y2Y4 487 aaPredicted RBP15.87■□□□□ 0.13
SYNPO-201ENST00000307662 HRO43593 1189 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 NME1P15531 152 aaKnown RBP15.87■□□□□ 0.13
SYNPO-201ENST00000307662 NPBWR1P48145 328 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 VEGFBP49765 207 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 DOK3Q7L591 496 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 SDF2Q99470 211 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 CHRNA9Q9UGM1 479 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 M0R082 166 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 CTNSO60931 367 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 GABRA2P47869 451 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 DOK1Q99704 481 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 ZNF385DQ9H6B1 395 aa15.87■□□□□ 0.13
SYNPO-201ENST00000307662 PLSCR5A0PG75 271 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 OLFM2O95897 454 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 DCTDP32321 178 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 EPHA5P54756 1037 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 LYG2Q86SG7 212 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 WDR89Q96FK6 387 aaPredicted RBP15.86■□□□□ 0.13
SYNPO-201ENST00000307662 PLEKHF2Q9H8W4 249 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 CD37P11049 281 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 C9orf135Q5VTT2 229 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 TMEM81Q6P7N7 255 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 ZNF2Q9BSG1 426 aaPredicted RBP15.86■□□□□ 0.13
SYNPO-201ENST00000307662 LYRM4Q9HD34 91 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 CA14Q9ULX7 337 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 TMEM202A6NGA9 273 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 PDGFBP01127 241 aaPredicted RBP15.86■□□□□ 0.13
SYNPO-201ENST00000307662 FABP6P51161 128 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 LTC4SQ16873 150 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 EMC4Q5J8M3 183 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 OR8G2PQ6IF36 304 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 STAC2Q6ZMT1 411 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 DBX2Q6ZNG2 339 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 FAM71CQ8NEG0 241 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 GNG12Q9UBI6 72 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 LAMA4Q16363 1823 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 ZIC2O95409 532 aaPredicted RBP15.86■□□□□ 0.13
SYNPO-201ENST00000307662 P2RX1P51575 399 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 MS4A6EQ96DS6 147 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 BCO1Q9HAY6 547 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 RYDENQ9NUL5 291 aaKnown RBP15.86■□□□□ 0.13
SYNPO-201ENST00000307662 C19orf53Q9UNZ5 99 aaPredicted RBP15.86■□□□□ 0.13
SYNPO-201ENST00000307662 E5RGE8 158 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 C2orf76Q3KRA6 126 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 TOE1Q96GM8 510 aaKnown RBP15.86■□□□□ 0.13
SYNPO-201ENST00000307662 CCNL2Q96S94 520 aaPredicted RBP15.86■□□□□ 0.13
SYNPO-201ENST00000307662 ISG20L2Q9H9L3 353 aaKnown RBP15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms