RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 APOBEC4Q8WW27 367 aaKnown RBP5.88□□□□□ -1.47
VPS35-201ENST00000299138 ASB17Q8WXJ9 295 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 IL22RA2Q969J5 263 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 PTX4Q96A99 478 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 AP5S1Q9NUS5 200 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 MYOTQ9UBF9 498 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 RASD1Q9Y272 281 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 ZSWIM8A7E2V4 1837 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 TMEM218A2RU14 115 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 OOEPA6NGQ2 149 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 SIGLEC6O43699 453 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 GPR137BO60478 399 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 ABLIM3O94929 683 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 GP1BBP13224 206 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 SGSHP51688 502 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 PGGT1BP53609 377 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 Q499Y3 187 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 TMEM225Q6GV28 225 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 LRRTM4Q86VH4 590 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 ZNF761Q86XN6 746 aaPredicted RBP5.88□□□□□ -1.47
VPS35-201ENST00000299138 OR13D1Q8NGV5 346 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 ABHD4Q8TB40 342 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 SFXN2Q96NB2 322 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 OR8B4Q96RC9 309 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 MYADMQ96S97 322 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 BARHL1Q9BZE3 327 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 SLC6A20Q9NP91 592 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 UTS2RQ9UKP6 389 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 FAM227AF5H4B4 570 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 GAPDHSO14556 408 aaPredicted RBP5.88□□□□□ -1.47
VPS35-201ENST00000299138 GPR37O15354 613 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 CNIH1O95406 144 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 EDN3P14138 238 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 IRF2P14316 349 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 EPHA2P29317 976 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 GJA4P35212 333 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 PLP1P60201 277 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 PLP2Q04941 152 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 TMEM115Q12893 351 aaPredicted RBP5.88□□□□□ -1.47
VPS35-201ENST00000299138 ZNF273Q14593 569 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 ACSM3Q53FZ2 586 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 LBHQ53QV2 105 aaPredicted RBP5.88□□□□□ -1.47
VPS35-201ENST00000299138 GDF6Q6KF10 455 aaPredicted RBP5.88□□□□□ -1.47
VPS35-201ENST00000299138 SMIM19Q96E16 107 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 NICN1Q9BSH3 213 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 CABLES2Q9BTV7 478 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 CPNE7Q9UBL6 633 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 SRPX2O60687 465 aaPredicted RBP5.88□□□□□ -1.47
VPS35-201ENST00000299138 FGF2P09038 288 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 ACAA1P09110 424 aaPredicted RBP5.88□□□□□ -1.47
VPS35-201ENST00000299138 NID1P14543 1247 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 GSK3AP49840 483 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 OR10A3P58181 314 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 SELENOVP59797 346 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 GSG1Q2KHT4 349 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 EMC4Q5J8M3 183 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 ZNF813Q6ZN06 617 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 Q6ZNB5 142 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 USP53Q70EK8 1073 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 ABHD13Q7L211 337 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 TMEM123Q8N131 208 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 ARIH2OSQ8N7S6 290 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 OR6T1Q8NGN1 323 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 DIO2Q92813 273 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 MIB2Q96AX9 1013 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 RNF208Q9H0X6 261 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 OR10A5Q9H207 317 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 GSX1Q9H4S2 264 aaPredicted RBP5.88□□□□□ -1.47
VPS35-201ENST00000299138 GPR173Q9NS66 373 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 ZNF629Q9UEG4 869 aaPredicted RBP5.88□□□□□ -1.47
VPS35-201ENST00000299138 A0A1B0GV72 72 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 A8MXK9 166 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 RNF224P0DH78 156 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 COMPP49747 757 aaPredicted RBP5.88□□□□□ -1.47
VPS35-201ENST00000299138 RPL11P62913 178 aaKnown RBP5.88□□□□□ -1.47
VPS35-201ENST00000299138 PMS2P11Q13670 270 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 SERTAD2Q14140 314 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 RAET1LQ5VY80 246 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 CPEB2Q7Z5Q1 589 aaKnown RBP5.88□□□□□ -1.47
VPS35-201ENST00000299138 DEFB128Q7Z7B8 93 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 SPRYD4Q8WW59 207 aaPredicted RBP5.88□□□□□ -1.47
VPS35-201ENST00000299138 NECTIN4Q96NY8 510 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 RSRP1Q9BUV0 290 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 BOCQ9BWV1 1114 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 TMEM59Q9BXS4 323 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 OR51I2Q9H344 312 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 TAF9BQ9HBM6 251 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 V9GY05 133 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 ZNF236Q9UL36 1845 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 M0R1X1 148 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 CYBAP13498 195 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 OR1D2P34982 312 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 SIRPAP78324 504 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 GABRG1Q8N1C3 465 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 OR4M1Q8NGD0 313 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 OR52E2Q8NGJ4 325 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 RAB8BQ92930 207 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 PRAP1Q96NZ9 151 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 CASD1Q96PB1 797 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 RBM14Q96PK6 669 aaKnown RBP5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms