RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 BSGP35613 385 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 SNRPEP62304 92 aaKnown RBP14.01□□□□□ -0.17
SHH-201ENST00000297261 CLINT1Q14677 625 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 STAC2Q6ZMT1 411 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 ZNF695Q8IW36 515 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 TMEM151BQ8IW70 566 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 MCEMP1Q8IX19 187 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 ZNF687Q8N1G0 1237 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 NKX3-1Q99801 234 aaPredicted RBP14.01□□□□□ -0.17
SHH-201ENST00000297261 FN3KRPQ9HA64 309 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 TAF9BQ9HBM6 251 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 MOKQ9UQ07 419 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 A0A0U1RQK1 487 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 TMEM200CA6NKL6 621 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 STMND1H3BQB6 276 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 TNFRSF10CO14798 259 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 ITGB2P05107 769 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 ZFP36L2P47974 494 aaKnown RBP14.01□□□□□ -0.17
SHH-201ENST00000297261 ARL6IP1Q15041 203 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 MAMSTRQ6ZN01 415 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 LINC00346Q8IVM7 164 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 SLC37A2Q8TED4 501 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 CNRIP1Q96F85 164 aaPredicted RBP14.01□□□□□ -0.17
SHH-201ENST00000297261 SERTAD3Q9UJW9 196 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 FBXO4Q9UKT5 387 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 FFAR1O14842 300 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 CXCL12P48061 93 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 SGCBQ16585 318 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 SLC36A2Q495M3 483 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 OR2A1Q8NGT9 310 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 GOT1L1Q8NHS2 421 aaPredicted RBP14.01□□□□□ -0.17
SHH-201ENST00000297261 EVA1AQ9H8M9 152 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 HS3ST3A1Q9Y663 406 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 P2RY10O00398 339 aa14□□□□□ -0.17
SHH-201ENST00000297261 GABRG2P18507 467 aa14□□□□□ -0.17
SHH-201ENST00000297261 MIB2Q96AX9 1013 aa14□□□□□ -0.17
SHH-201ENST00000297261 COX14Q96I36 57 aa14□□□□□ -0.17
SHH-201ENST00000297261 OCSTAMPQ9BR26 566 aa14□□□□□ -0.17
SHH-201ENST00000297261 TMEM59Q9BXS4 323 aa14□□□□□ -0.17
SHH-201ENST00000297261 ING1Q9UK53 422 aaPredicted RBP14□□□□□ -0.17
SHH-201ENST00000297261 CNOT4O95628 575 aaKnown RBP14□□□□□ -0.17
SHH-201ENST00000297261 JMJD7P0C870 316 aa14□□□□□ -0.17
SHH-201ENST00000297261 NME1P15531 152 aaKnown RBP14□□□□□ -0.17
SHH-201ENST00000297261 CSNK1EP49674 416 aaKnown RBP14□□□□□ -0.17
SHH-201ENST00000297261 DIO1P49895 249 aa14□□□□□ -0.17
SHH-201ENST00000297261 SMAD4Q13485 552 aaKnown RBP14□□□□□ -0.17
SHH-201ENST00000297261 FBXW12Q6X9E4 464 aa14□□□□□ -0.17
SHH-201ENST00000297261 CAMKMTQ7Z624 323 aa14□□□□□ -0.17
SHH-201ENST00000297261 OR4D9Q8NGE8 314 aa14□□□□□ -0.17
SHH-201ENST00000297261 MS4A6EQ96DS6 147 aa14□□□□□ -0.17
SHH-201ENST00000297261 PTGES2Q9H7Z7 377 aa14□□□□□ -0.17
SHH-201ENST00000297261 KCNS2Q9ULS6 477 aa14□□□□□ -0.17
SHH-201ENST00000297261 SLC7A11Q9UPY5 501 aa14□□□□□ -0.17
SHH-201ENST00000297261 ZBTB32Q9Y2Y4 487 aaPredicted RBP14□□□□□ -0.17
SHH-201ENST00000297261 KNTC1P50748 2209 aa14□□□□□ -0.17
SHH-201ENST00000297261 SHOXO15266 292 aa14□□□□□ -0.17
SHH-201ENST00000297261 DUX1O43812 170 aa14□□□□□ -0.17
SHH-201ENST00000297261 NME2P1O60361 137 aa14□□□□□ -0.17
SHH-201ENST00000297261 NQO2P16083 231 aa14□□□□□ -0.17
SHH-201ENST00000297261 ARTNQ5T4W7 220 aa14□□□□□ -0.17
SHH-201ENST00000297261 SLC16A13Q7RTY0 426 aa14□□□□□ -0.17
SHH-201ENST00000297261 MCATQ8IVS2 390 aaKnown RBP14□□□□□ -0.17
SHH-201ENST00000297261 SYS1Q8N2H4 156 aa14□□□□□ -0.17
SHH-201ENST00000297261 FGGYQ96C11 551 aa14□□□□□ -0.17
SHH-201ENST00000297261 GIMAP5Q96F15 307 aa14□□□□□ -0.17
SHH-201ENST00000297261 OR1F2PQ96R84 312 aa14□□□□□ -0.17
SHH-201ENST00000297261 UBQLN4Q9NRR5 601 aa14□□□□□ -0.17
SHH-201ENST00000297261 KPTNQ9Y664 436 aa14□□□□□ -0.17
SHH-201ENST00000297261 DCTN6O00399 190 aa14□□□□□ -0.17
SHH-201ENST00000297261 OR2T1O43869 369 aa14□□□□□ -0.17
SHH-201ENST00000297261 ZNF354AO60765 605 aaPredicted RBP14□□□□□ -0.17
SHH-201ENST00000297261 PRAMEF4O60810 478 aa14□□□□□ -0.17
SHH-201ENST00000297261 AVPR2P30518 371 aa14□□□□□ -0.17
SHH-201ENST00000297261 CX3CR1P49238 355 aa14□□□□□ -0.17
SHH-201ENST00000297261 GZMMP51124 257 aa14□□□□□ -0.17
SHH-201ENST00000297261 RAG2P55895 527 aa14□□□□□ -0.17
SHH-201ENST00000297261 PHF19Q5T6S3 580 aa14□□□□□ -0.17
SHH-201ENST00000297261 PRAMEF9Q5VWM5 478 aa14□□□□□ -0.17
SHH-201ENST00000297261 ADGRE4PQ86SQ3 457 aa14□□□□□ -0.17
SHH-201ENST00000297261 MRPL41Q8IXM3 137 aaKnown RBP14□□□□□ -0.17
SHH-201ENST00000297261 ZC3HAV1LQ96H79 300 aaKnown RBP14□□□□□ -0.17
SHH-201ENST00000297261 FBXL4Q9UKA2 621 aa14□□□□□ -0.17
SHH-201ENST00000297261 ELF5Q9UKW6 265 aaPredicted RBP14□□□□□ -0.17
SHH-201ENST00000297261 GPR31O00270 319 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 SEC14L5O43304 696 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 TAGLN2P37802 199 aaKnown RBP13.99□□□□□ -0.17
SHH-201ENST00000297261 POU3F1Q03052 451 aaPredicted RBP13.99□□□□□ -0.17
SHH-201ENST00000297261 PMPCAQ10713 525 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 HMGN3Q15651 99 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 C2orf76Q3KRA6 126 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 EEF1A1P5Q5VTE0 462 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 TMEM92Q6UXU6 159 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 TRILQ7L0X0 811 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 MUC20Q8N307 709 aaPredicted RBP13.99□□□□□ -0.17
SHH-201ENST00000297261 LILRB2Q8N423 598 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 FAM71CQ8NEG0 241 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 NUDCD2Q8WVJ2 157 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 ASB17Q8WXJ9 295 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 RRNAD1Q96FB5 475 aaKnown RBP13.99□□□□□ -0.17
SHH-201ENST00000297261 NELFAQ9H3P2 528 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms