RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 GHSRQ92847 366 aa12.48□□□□□ -0.41
SS18-201ENST00000269137 KCTD7Q96MP8 289 aa12.48□□□□□ -0.41
SS18-201ENST00000269137 CDADC1Q9BWV3 514 aa12.48□□□□□ -0.41
SS18-201ENST00000269137 PRRG4Q9BZD6 226 aa12.48□□□□□ -0.41
SS18-201ENST00000269137 ULBP2Q9BZM5 246 aa12.48□□□□□ -0.41
SS18-201ENST00000269137 ELOVL3Q9HB03 270 aa12.48□□□□□ -0.41
SS18-201ENST00000269137 PARPBPQ9NWS1 579 aa12.48□□□□□ -0.41
SS18-201ENST00000269137 CAMK2AQ9UQM7 478 aa12.48□□□□□ -0.41
SS18-201ENST00000269137 B3GNT3Q9Y2A9 372 aa12.48□□□□□ -0.41
SS18-201ENST00000269137 ZNF175Q9Y473 711 aa12.48□□□□□ -0.41
SS18-201ENST00000269137 NCOA6Q14686 2063 aaPredicted RBP12.47□□□□□ -0.41
SS18-201ENST00000269137 TRBV2A0A0J9YWF9 115 aa12.47□□□□□ -0.41
SS18-201ENST00000269137 K7EM74 188 aa12.47□□□□□ -0.41
SS18-201ENST00000269137 CACNA1AO00555 2505 aa12.47□□□□□ -0.41
SS18-201ENST00000269137 GABRPO00591 440 aa12.47□□□□□ -0.41
SS18-201ENST00000269137 ZNF254O75437 659 aa12.47□□□□□ -0.41
SS18-201ENST00000269137 RGS9O75916 674 aaPredicted RBP12.47□□□□□ -0.41
SS18-201ENST00000269137 EDNRAP25101 427 aa12.47□□□□□ -0.41
SS18-201ENST00000269137 CDAP32320 146 aa12.47□□□□□ -0.41
SS18-201ENST00000269137 PSMB10P40306 273 aa12.47□□□□□ -0.41
SS18-201ENST00000269137 GUCA1AP43080 201 aaPredicted RBP12.47□□□□□ -0.41
SS18-201ENST00000269137 GDI2P50395 445 aaKnown RBP12.47□□□□□ -0.41
SS18-201ENST00000269137 LSM6P62312 80 aaKnown RBP12.47□□□□□ -0.41
SS18-201ENST00000269137 C22orf42Q6IC83 251 aa12.47□□□□□ -0.41
SS18-201ENST00000269137 TMEM91Q6ZNR0 172 aa12.47□□□□□ -0.41
SS18-201ENST00000269137 DCXRQ7Z4W1 244 aa12.47□□□□□ -0.41
SS18-201ENST00000269137 ABHD4Q8TB40 342 aa12.47□□□□□ -0.41
SS18-201ENST00000269137 SNRNP27Q8WVK2 155 aaKnown RBP12.47□□□□□ -0.41
SS18-201ENST00000269137 RNF133Q8WVZ7 376 aa12.47□□□□□ -0.41
SS18-201ENST00000269137 HDHD5Q9BXW7 423 aa12.47□□□□□ -0.41
SS18-201ENST00000269137 KCNN2Q9H2S1 579 aa12.47□□□□□ -0.41
SS18-201ENST00000269137 PLGRKTQ9HBL7 147 aa12.47□□□□□ -0.41
SS18-201ENST00000269137 GP6Q9HCN6 339 aa12.47□□□□□ -0.41
SS18-201ENST00000269137 B3GAT2Q9NPZ5 323 aa12.47□□□□□ -0.41
SS18-201ENST00000269137 CCDC59Q9P031 241 aaKnown RBP12.47□□□□□ -0.41
SS18-201ENST00000269137 NOSIPQ9Y314 301 aaKnown RBP12.47□□□□□ -0.41
SS18-201ENST00000269137 NCOR2Q9Y618 2525 aa12.47□□□□□ -0.41
SS18-201ENST00000269137 LHFPL6Q9Y693 200 aa12.47□□□□□ -0.41
SS18-201ENST00000269137 OR6C65A6NJZ3 312 aa12.46□□□□□ -0.41
SS18-201ENST00000269137 SC5DO75845 299 aa12.46□□□□□ -0.41
SS18-201ENST00000269137 CLPXO76031 633 aa12.46□□□□□ -0.41
SS18-201ENST00000269137 MSR1P21757 451 aa12.46□□□□□ -0.41
SS18-201ENST00000269137 ZNF84P51523 738 aa12.46□□□□□ -0.41
SS18-201ENST00000269137 NANOS3P60323 173 aaKnown RBP12.46□□□□□ -0.41
SS18-201ENST00000269137 ALKBH1Q13686 389 aaKnown RBP12.46□□□□□ -0.41
SS18-201ENST00000269137 LRRN1Q6UXK5 716 aa12.46□□□□□ -0.41
SS18-201ENST00000269137 LINC00299Q6ZSB3 139 aa12.46□□□□□ -0.41
SS18-201ENST00000269137 RHOUQ7L0Q8 258 aa12.46□□□□□ -0.41
SS18-201ENST00000269137 KRT77Q7Z794 578 aa12.46□□□□□ -0.41
SS18-201ENST00000269137 ADGRE4PQ86SQ3 457 aa12.46□□□□□ -0.41
SS18-201ENST00000269137 LINC00346Q8IVM7 164 aa12.46□□□□□ -0.41
SS18-201ENST00000269137 CPT1CQ8TCG5 803 aa12.46□□□□□ -0.41
SS18-201ENST00000269137 SARAFQ96BY9 339 aa12.46□□□□□ -0.41
SS18-201ENST00000269137 ABHD17AQ96GS6 310 aa12.46□□□□□ -0.41
SS18-201ENST00000269137 DCLRE1CQ96SD1 692 aaKnown RBP12.46□□□□□ -0.41
SS18-201ENST00000269137 MED18Q9BUE0 208 aa12.46□□□□□ -0.41
SS18-201ENST00000269137 SLIRPQ9GZT3 109 aaKnown RBP12.46□□□□□ -0.41
SS18-201ENST00000269137 NELFAQ9H3P2 528 aa12.46□□□□□ -0.41
SS18-201ENST00000269137 C1orf198Q9H425 327 aa12.46□□□□□ -0.41
SS18-201ENST00000269137 EMC7Q9NPA0 242 aa12.46□□□□□ -0.41
SS18-201ENST00000269137 RAXQ9Y2V3 346 aa12.46□□□□□ -0.41
SS18-201ENST00000269137 MRPL33O75394 65 aaKnown RBP12.46□□□□□ -0.42
SS18-201ENST00000269137 RPP14O95059 124 aaKnown RBP12.46□□□□□ -0.42
SS18-201ENST00000269137 SERPINA3P01011 423 aa12.46□□□□□ -0.42
SS18-201ENST00000269137 IL1AP01583 271 aa12.46□□□□□ -0.42
SS18-201ENST00000269137 YES1P07947 543 aa12.46□□□□□ -0.42
SS18-201ENST00000269137 FCGR2AP12318 317 aa12.46□□□□□ -0.42
SS18-201ENST00000269137 RIDAP52758 137 aaKnown RBP12.46□□□□□ -0.42
SS18-201ENST00000269137 MRPS34P82930 218 aaKnown RBP12.46□□□□□ -0.42
SS18-201ENST00000269137 C11orf91Q3C1V1 193 aa12.46□□□□□ -0.42
SS18-201ENST00000269137 GPR137CQ8N3F9 429 aa12.46□□□□□ -0.42
SS18-201ENST00000269137 OR2AJ1Q8NGZ0 328 aa12.46□□□□□ -0.42
SS18-201ENST00000269137 OR2G2Q8NGZ5 317 aa12.46□□□□□ -0.42
SS18-201ENST00000269137 NABP1Q96AH0 204 aa12.46□□□□□ -0.42
SS18-201ENST00000269137 MAP6Q96JE9 813 aa12.46□□□□□ -0.42
SS18-201ENST00000269137 RBM24Q9BX46 236 aaKnown RBP12.46□□□□□ -0.42
SS18-201ENST00000269137 LINC00470Q9BZP3 86 aa12.46□□□□□ -0.42
SS18-201ENST00000269137 GALNT8Q9NY28 637 aa12.46□□□□□ -0.42
SS18-201ENST00000269137 LHX6Q9UPM6 363 aa12.46□□□□□ -0.42
SS18-201ENST00000269137 A3GALT2U3KPV4 340 aa12.46□□□□□ -0.42
SS18-201ENST00000269137 PMF1-BGLAPU3KQ54 211 aa12.46□□□□□ -0.42
SS18-201ENST00000269137 SLC22A20A6NK97 555 aa12.45□□□□□ -0.42
SS18-201ENST00000269137 CRYABP02511 175 aaKnown RBP12.45□□□□□ -0.42
SS18-201ENST00000269137 INHBBP09529 407 aa12.45□□□□□ -0.42
SS18-201ENST00000269137 NPR2P20594 1047 aa12.45□□□□□ -0.42
SS18-201ENST00000269137 RPS19P39019 145 aaKnown RBP12.45□□□□□ -0.42
SS18-201ENST00000269137 OPRL1P41146 370 aa12.45□□□□□ -0.42
SS18-201ENST00000269137 CCR9P51686 369 aa12.45□□□□□ -0.42
SS18-201ENST00000269137 STK11Q15831 433 aa12.45□□□□□ -0.42
SS18-201ENST00000269137 SGCAQ16586 387 aa12.45□□□□□ -0.42
SS18-201ENST00000269137 PLEKHN1Q494U1 663 aaPredicted RBP12.45□□□□□ -0.42
SS18-201ENST00000269137 CORO6Q6QEF8 472 aa12.45□□□□□ -0.42
SS18-201ENST00000269137 CROCCP3Q8IVE0 287 aa12.45□□□□□ -0.42
SS18-201ENST00000269137 MCEMP1Q8IX19 187 aa12.45□□□□□ -0.42
SS18-201ENST00000269137 TUSC5Q8IXB3 177 aa12.45□□□□□ -0.42
SS18-201ENST00000269137 HSD17B8Q92506 261 aa12.45□□□□□ -0.42
SS18-201ENST00000269137 CRLF2Q9HC73 371 aa12.45□□□□□ -0.42
SS18-201ENST00000269137 FRRS1LQ9P0K9 344 aa12.45□□□□□ -0.42
SS18-201ENST00000269137 GDF2Q9UK05 429 aaPredicted RBP12.45□□□□□ -0.42
SS18-201ENST00000269137 POLR1DQ9Y2S0 133 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms