RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 SIPA1L1O43166 1804 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 PAPLNO95428 1278 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 ZP3P21754 424 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 KCNJ10P78508 379 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 CTBSQ01459 385 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 BATFQ16520 125 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 OR8U1Q8NH10 309 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 ARHGDIGQ99819 225 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 CHST11Q9NPF2 352 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 MRPS2Q9Y399 296 aaKnown RBP5.6□□□□□ -1.51
VPS13D-201ENST00000011700 PRAMEF4O60810 478 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 OR7C1O76099 320 aaPredicted RBP5.6□□□□□ -1.51
VPS13D-201ENST00000011700 NXPH2O95156 264 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 CHRM4P08173 479 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 NKPD1Q17RQ9 610 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 CFAP77Q6ZQR2 320 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 NUFIP2Q7Z417 695 aaKnown RBP5.6□□□□□ -1.51
VPS13D-201ENST00000011700 OR2AK2Q8NG84 335 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 OR4C5Q8NGB2 326 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 ZNF516Q92618 1163 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 GALMQ96C23 342 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 TVP23CQ96ET8 276 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 DHRS9Q9BPW9 319 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 HDGFL3Q9Y3E1 203 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 MGAMO43451 1857 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 SLCO2B1O94956 709 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 TNFSF8P32971 234 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 NKX2-1P43699 371 aaPredicted RBP5.6□□□□□ -1.51
VPS13D-201ENST00000011700 XCR1P46094 333 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 NKX2-4Q9H2Z4 354 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 HEYLQ9NQ87 328 aaPredicted RBP5.6□□□□□ -1.51
VPS13D-201ENST00000011700 SLC2A8Q9NY64 477 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 DENND4CQ5VZ89 1909 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 SNED1Q8TER0 1413 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 RGS13O14921 159 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 FGF7P21781 194 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 GPX3P22352 226 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 ELAVL4P26378 380 aaKnown RBP5.6□□□□□ -1.51
VPS13D-201ENST00000011700 RPL35P42766 123 aaKnown RBP5.6□□□□□ -1.51
VPS13D-201ENST00000011700 OR2B8PP59922 312 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 TMEM236Q5W0B7 351 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 ZNF705AQ6ZN79 300 aaPredicted RBP5.6□□□□□ -1.51
VPS13D-201ENST00000011700 GRAMD2AQ8IUY3 354 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 TMEM151BQ8IW70 566 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 FAM26EQ8N5C1 309 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 OR4D6Q8NGJ1 314 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 OR1L1Q8NH94 360 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 TAAR6Q96RI8 345 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 RAB40CQ96S21 281 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 GABARAPL3Q9BY60 117 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 GSTO2Q9H4Y5 243 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 BCO1Q9HAY6 547 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 GKN1Q9NS71 199 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 MYEF2Q9P2K5 600 aaKnown RBP5.6□□□□□ -1.51
VPS13D-201ENST00000011700 NRXN3Q9Y4C0 1643 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 PAPPA2Q9BXP8 1791 aa5.6□□□□□ -1.51
VPS13D-201ENST00000011700 TMEM265A0A087WTH1 108 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 DCDC2BA2VCK2 349 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 C9JVG2 144 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 XRCC3O43542 346 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 ADRA1AP35348 466 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 RBP2P50120 134 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 NDUFA6P56556 154 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 ALKBH1Q13686 389 aaKnown RBP5.59□□□□□ -1.51
VPS13D-201ENST00000011700 ELOBQ15370 118 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 MRPL2Q5T653 305 aaKnown RBP5.59□□□□□ -1.51
VPS13D-201ENST00000011700 IL20RBQ6UXL0 311 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 BPIFCQ8NFQ6 507 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 SFT2D1Q8WV19 159 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 ISL2Q96A47 359 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 PERPQ96FX8 193 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 EGLN2Q96KS0 407 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 PEBP4Q96S96 227 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 MMP26Q9NRE1 261 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 CNIH4Q9P003 139 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 KLF15Q9UIH9 416 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 SHANK3Q9BYB0 1731 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 DENND4AQ7Z401 1863 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 RNF225M0QZC1 329 aaPredicted RBP5.59□□□□□ -1.51
VPS13D-201ENST00000011700 CD79AP11912 226 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 CRISP2P16562 243 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 SURF2Q15527 256 aaPredicted RBP5.59□□□□□ -1.51
VPS13D-201ENST00000011700 HLA-CQ95604 372 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 SHARPINQ9H0F6 387 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 ATP13A2Q9NQ11 1180 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 NAV3Q8IVL0 2385 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 NCOA6Q14686 2063 aaPredicted RBP5.59□□□□□ -1.51
VPS13D-201ENST00000011700 LOC285556D6RIA3 1793 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 GPX2P18283 190 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 ERVPABLB-1P60509 514 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 KRTDAPP60985 99 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 SHC2P98077 582 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 VASNQ6EMK4 673 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 IL1F10Q8WWZ1 152 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 AKR1E2Q96JD6 320 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 ESRP2Q9H6T0 727 aaKnown RBP5.59□□□□□ -1.51
VPS13D-201ENST00000011700 IGSF5Q9NSI5 407 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 IER3IP1Q9Y5U9 82 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 TCRBV21S2A2A0A5A6 115 aa5.59□□□□□ -1.51
VPS13D-201ENST00000011700 SGK494L7N484 410 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms