RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 LINC00346Q8IVM7 164 aa14.96□□□□□ -0.01
CLN3-252ENST00000636907 OR6N1Q8NGY5 312 aa14.96□□□□□ -0.01
CLN3-252ENST00000636907 NEIL3Q8TAT5 605 aa14.96□□□□□ -0.01
CLN3-252ENST00000636907 HSD17B8Q92506 261 aa14.96□□□□□ -0.01
CLN3-252ENST00000636907 LDAHQ9H6V9 325 aa14.96□□□□□ -0.01
CLN3-252ENST00000636907 MSRB2Q9Y3D2 182 aa14.96□□□□□ -0.01
CLN3-252ENST00000636907 DCHS1Q96JQ0 3298 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 AQP8O94778 261 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 CD1AP06126 327 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 NR2C1P13056 603 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 CDAP32320 146 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 NTF4P34130 210 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 MXD1Q05195 221 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 RASGEF1BQ0VAM2 473 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 MRPL28Q13084 256 aaKnown RBP14.95□□□□□ -0.02
CLN3-252ENST00000636907 ZNF404Q494X3 552 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 SPATC1Q76KD6 591 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 OR10H5Q8NGA6 315 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 OR13C5Q8NGS8 318 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 OR52N5Q8NH56 324 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 MCFD2Q8NI22 146 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 ABHD4Q8TB40 342 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 ABHD3Q8WU67 409 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 PDCD1LG2Q9BQ51 273 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 NXF2Q9GZY0 626 aaKnown RBP14.95□□□□□ -0.02
CLN3-252ENST00000636907 SEC61A2Q9H9S3 476 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 ELOVL3Q9HB03 270 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 SNTG1Q9NSN8 517 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 FOXD3Q9UJU5 478 aaPredicted RBP14.95□□□□□ -0.02
CLN3-252ENST00000636907 SSUH2Q9Y2M2 353 aa14.95□□□□□ -0.02
CLN3-252ENST00000636907 SPTBN2O15020 2390 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 TRGV5A0A0B4J1U4 118 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 SC5DO75845 299 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 IL1AP01583 271 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 INHBBP09529 407 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 CLEC2LP0C7M8 214 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 SDC2P34741 201 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 ZNF133P52736 654 aaPredicted RBP14.94□□□□□ -0.02
CLN3-252ENST00000636907 ROM1Q03395 351 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 C3AR1Q16581 482 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 MOGQ16653 247 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 C10orf128Q5T292 105 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 DCXRQ7Z4W1 244 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 ZNF679Q8IYX0 411 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 MS4A15Q8N5U1 240 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 ST7LQ8TDW4 575 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 HTRA1Q92743 480 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 PNPLA2Q96AD5 504 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 EXO5Q9H790 373 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 SIAEQ9HAT2 523 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 EMC7Q9NPA0 242 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 SPRR3Q9UBC9 169 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 RCE1Q9Y256 329 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 UGT2A1Q9Y4X1 527 aa14.94□□□□□ -0.02
CLN3-252ENST00000636907 A0A087WV48 116 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 A0A1B0GTH9 108 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 SHISA3A0PJX4 238 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 HSPB2A8KAH6 182 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 TFECO14948 347 aaPredicted RBP14.93□□□□□ -0.02
CLN3-252ENST00000636907 ZNF24P17028 368 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 SOX6P35712 828 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 OPRL1P41146 370 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 RPS11P62280 158 aaKnown RBP eCLIP14.93□□□□□ -0.02
CLN3-252ENST00000636907 ROR2Q01974 943 aaKnown RBP14.93□□□□□ -0.02
CLN3-252ENST00000636907 ALKBH1Q13686 389 aaKnown RBP14.93□□□□□ -0.02
CLN3-252ENST00000636907 HSPB2Q16082 182 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 KCTD18Q6PI47 426 aaPredicted RBP14.93□□□□□ -0.02
CLN3-252ENST00000636907 CORO6Q6QEF8 472 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 PLXDC2Q6UX71 529 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 KRT77Q7Z794 578 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 C20orf196Q8IYI0 205 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 ZADH2Q8N4Q0 377 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 OR6Q1Q8NGQ2 317 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 HAVCR2Q8TDQ0 301 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 MAP6Q96JE9 813 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 MED18Q9BUE0 208 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 MROQ9BYG7 248 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 BARHL1Q9BZE3 327 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 KCNN2Q9H2S1 579 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 MMP27Q9H306 513 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 TPK1Q9H3S4 243 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 CYB5R1Q9UHQ9 305 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 TMCC2O75069 709 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 SYNGR4O95473 234 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 ACSM3Q53FZ2 586 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 IGFL3Q6UXB1 125 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 CEACAM19Q7Z692 300 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 SPACA3Q8IXA5 215 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 SLC25A46Q96AG3 418 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 INTS12Q96CB8 462 aaKnown RBP14.93□□□□□ -0.02
CLN3-252ENST00000636907 PPIL3Q9H2H8 161 aaKnown RBP14.93□□□□□ -0.02
CLN3-252ENST00000636907 POLE4Q9NR33 117 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 PAQR5Q9NXK6 330 aaPredicted RBP14.93□□□□□ -0.02
CLN3-252ENST00000636907 FRRS1LQ9P0K9 344 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 A3GALT2U3KPV4 340 aa14.93□□□□□ -0.02
CLN3-252ENST00000636907 TNRC6AQ8NDV7 1962 aaKnown RBP14.92□□□□□ -0.02
CLN3-252ENST00000636907 LOC400499M0QZD8 3231 aa14.92□□□□□ -0.02
CLN3-252ENST00000636907 SMIM30A4D0T7 59 aa14.92□□□□□ -0.02
CLN3-252ENST00000636907 GPRIN2O60269 458 aa14.92□□□□□ -0.02
CLN3-252ENST00000636907 SLC43A1O75387 559 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms