RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 UBQLNLQ8IYU4 475 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 RFLNBQ8N5W9 214 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 TEX19Q8NA77 164 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 OR6N1Q8NGY5 312 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 MROQ9BYG7 248 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 LINC00470Q9BZP3 86 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 SLIRPQ9GZT3 109 aaKnown RBP9.39□□□□□ -0.91
CLN3-248ENST00000636355 PRDM14Q9GZV8 571 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 NXF2Q9GZY0 626 aaKnown RBP9.39□□□□□ -0.91
CLN3-248ENST00000636355 MMP27Q9H306 513 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 NELFAQ9H3P2 528 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 MOB1AQ9H8S9 216 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 EXOSC4Q9NPD3 245 aaKnown RBP9.39□□□□□ -0.91
CLN3-248ENST00000636355 PLSCR2Q9NRY7 297 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 PARPBPQ9NWS1 579 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 COA3Q9Y2R0 106 aaPredicted RBP9.39□□□□□ -0.91
CLN3-248ENST00000636355 AKAP13Q12802 2813 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 A0A075B6Q4 140 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 OR14I1A6ND48 311 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 ANKRD61A6NGH8 418 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 TVP23AA6NH52 213 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 K7ENP7 123 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 GABRPO00591 440 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 UPK3AO75631 287 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 ARL6IP5O75915 188 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 OPN1LWP04000 364 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 NPR2P20594 1047 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 MSR1P21757 451 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 MTNR1BP49286 362 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 GDI2P50395 445 aaKnown RBP9.38□□□□□ -0.91
CLN3-248ENST00000636355 RIDAP52758 137 aaKnown RBP9.38□□□□□ -0.91
CLN3-248ENST00000636355 MRPS34P82930 218 aaKnown RBP9.38□□□□□ -0.91
CLN3-248ENST00000636355 DYNC1I2Q13409 638 aaKnown RBP9.38□□□□□ -0.91
CLN3-248ENST00000636355 CAMK2DQ13557 499 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 ZNF829Q3KNS6 432 aaPredicted RBP9.38□□□□□ -0.91
CLN3-248ENST00000636355 ZNF404Q494X3 552 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 TP53I3Q53FA7 332 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 INO80CQ6PI98 192 aaPredicted RBP9.38□□□□□ -0.91
CLN3-248ENST00000636355 ARL9Q6T311 187 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 TPRA1Q86W33 373 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 CROCCP3Q8IVE0 287 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 ZIC4Q8N9L1 334 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 ST7LQ8TDW4 575 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 SNRNP27Q8WVK2 155 aaKnown RBP9.38□□□□□ -0.91
CLN3-248ENST00000636355 RNF133Q8WVZ7 376 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 S100ZQ8WXG8 99 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 AP3S1Q92572 193 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 MCHR2Q969V1 340 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 ZNF385AQ96PM9 386 aaKnown RBP9.38□□□□□ -0.91
CLN3-248ENST00000636355 EMC6Q9BV81 110 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 ULBP2Q9BZM5 246 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 COMMD4Q9H0A8 199 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 C1orf198Q9H425 327 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 RERGLQ9H628 205 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 CCDC86Q9H6F5 360 aaKnown RBP9.38□□□□□ -0.91
CLN3-248ENST00000636355 POLE4Q9NR33 117 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 GLRX2Q9NS18 164 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 CYB5R1Q9UHQ9 305 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 MRM2Q9UI43 246 aaKnown RBP9.38□□□□□ -0.91
CLN3-248ENST00000636355 IKZF2Q9UKS7 526 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 KLHDC2Q9Y2U9 406 aa9.38□□□□□ -0.91
CLN3-248ENST00000636355 ANKRD11Q6UB99 2663 aaPredicted RBP9.38□□□□□ -0.91
CLN3-248ENST00000636355 TRBV2A0A0J9YWF9 115 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 IQCMA0A1B0GVH7 501 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 FAM171A2A8MVW0 826 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 ZNF879B4DU55 563 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 ZNF878C9JN71 531 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 DHHO43323 396 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 ITGB2P05107 769 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 QDPRP09417 244 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 NR4A1P22736 598 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 MYL9P24844 172 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 EDNRAP25101 427 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 RFC3P40938 356 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 TMPRSS3P57727 454 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 LSM3P62310 102 aaKnown RBP9.37□□□□□ -0.91
CLN3-248ENST00000636355 FABP5Q01469 135 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 ROR2Q01974 943 aaKnown RBP9.37□□□□□ -0.91
CLN3-248ENST00000636355 ALKBH1Q13686 389 aaKnown RBP9.37□□□□□ -0.91
CLN3-248ENST00000636355 EIF2B1Q14232 305 aaKnown RBP9.37□□□□□ -0.91
CLN3-248ENST00000636355 SF3B4Q15427 424 aaKnown RBP eCLIP9.37□□□□□ -0.91
CLN3-248ENST00000636355 LIPNQ5VXI9 398 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 CHMP1BQ7LBR1 199 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 KRT77Q7Z794 578 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 SIAH3Q8IW03 269 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 GPR137CQ8N3F9 429 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 YIPF7Q8N8F6 280 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 OR2AJ1Q8NGZ0 328 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 CPT1CQ8TCG5 803 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 NSMAFQ92636 917 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 SLC25A46Q96AG3 418 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 SARAFQ96BY9 339 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 TM9SF2Q99805 663 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 ABHD6Q9BV23 337 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 TMED9Q9BVK6 235 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 LDAHQ9H6V9 325 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 EXO5Q9H790 373 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 HMG20AQ9NP66 347 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 PALMDQ9NP74 551 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 GALNT8Q9NY28 637 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms