RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 AZI2Q9H6S1 392 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 NIPAL2Q9H841 368 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 KLHL28Q9NXS3 571 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 HYOU1Q9Y4L1 999 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 ATP10AO60312 1499 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 K7EQM0 130 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 POLR1CO15160 346 aaPredicted RBP0.89□□□□□ -2.27
SCN1A-208ENST00000625916 SOX15O60248 233 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 ZNF735P0CB33 412 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 DBTP11182 482 aaKnown RBP0.89□□□□□ -2.27
SCN1A-208ENST00000625916 NCK1P16333 377 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 RAB3BP20337 219 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 PSMA5P28066 241 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 SSTR5P35346 364 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 EPS15P42566 896 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 CCT3P49368 545 aaKnown RBP0.89□□□□□ -2.27
SCN1A-208ENST00000625916 FBXW4P57775 412 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 IRX3P78415 501 aaPredicted RBP0.89□□□□□ -2.27
SCN1A-208ENST00000625916 PTPN20Q4JDL3 420 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 ORMDL2Q53FV1 153 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 METTL21CQ5VZV1 264 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 OR2A2Q6IF42 318 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 SPINT4Q6UDR6 99 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 PLET1Q6UQ28 207 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 SASS6Q6UVJ0 657 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 LRRC74BQ6ZQY2 392 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 SNX20Q7Z614 316 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 DHDDSQ86SQ9 333 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 TMEM105Q8N8V8 129 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 FAM83FQ8NEG4 500 aaPredicted RBP0.89□□□□□ -2.27
SCN1A-208ENST00000625916 OR2T34Q8NGX1 318 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 FAM110BQ8TC76 370 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 PIFOQ8TCI5 191 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 SCFD1Q8WVM8 642 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 SLC25A46Q96AG3 418 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 C10orf35Q96D05 121 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 IFT74Q96LB3 600 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 MTMR9Q96QG7 549 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 ZNF607Q96SK3 696 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 CNN2Q99439 309 aaKnown RBP0.89□□□□□ -2.27
SCN1A-208ENST00000625916 TIMM17AQ99595 171 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 RAB33BQ9H082 229 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 C1orf198Q9H425 327 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 FN3KRPQ9HA64 309 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 NMRAL1Q9HBL8 299 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 SLC35D1Q9NTN3 355 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 SNX6Q9UNH7 406 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 TMED5Q9Y3A6 229 aa0.89□□□□□ -2.27
SCN1A-208ENST00000625916 SORL1Q92673 2214 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 ZNF98A6NK75 572 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 ZNF716A6NP11 495 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 F6UB75 175 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 J3QRE1 110 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 K7EPI3 171 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 SMPD2O60906 423 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 AIFM1O95831 613 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 HLA-DQB1P01920 261 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 IQCF3P0C7M6 154 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 ZNF688P0C7X2 276 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 CCNB1P14635 433 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 VHLP40337 213 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 GDI2P50395 445 aaKnown RBP0.88□□□□□ -2.27
SCN1A-208ENST00000625916 ZNF138P52744 262 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 UBE2NP61088 152 aaKnown RBP0.88□□□□□ -2.27
SCN1A-208ENST00000625916 RPS11P62280 158 aaKnown RBP eCLIP0.88□□□□□ -2.27
SCN1A-208ENST00000625916 ECH1Q13011 328 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 TMEM205Q6UW68 189 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 Q6ZPB1 254 aaPredicted RBP0.88□□□□□ -2.27
SCN1A-208ENST00000625916 WDFY1Q8IWB7 410 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 TMEM256Q8N2U0 113 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 METTL13Q8N6R0 699 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 ST20-AS1Q8NBB2 130 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 HSD17B11Q8NBQ5 300 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 APCDD1LQ8NCL9 501 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 C1orf64Q8NEQ6 169 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 TRPV1Q8NER1 839 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 CIRBP-AS1Q8TBR5 109 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 C17orf50Q8WW18 174 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 SHC3Q92529 594 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 NTAN1Q96AB6 310 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 PLEKHA8Q96JA3 519 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 CNDP1Q96KN2 507 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 ZNF488Q96MN9 340 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 PANX2Q96RD6 677 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 NPY6RQ99463 290 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 RMND5AQ9H871 391 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 SGK2Q9HBY8 427 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 EPS15L1Q9UBC2 864 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 DHCR7Q9UBM7 475 aaKnown RBP0.88□□□□□ -2.27
SCN1A-208ENST00000625916 SH3BGRL2Q9UJC5 107 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 PTBP2Q9UKA9 531 aaKnown RBP0.88□□□□□ -2.27
SCN1A-208ENST00000625916 ADAM28Q9UKQ2 775 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 CDH9Q9ULB4 789 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 PIGLQ9Y2B2 252 aa0.88□□□□□ -2.27
SCN1A-208ENST00000625916 MRPS7Q9Y2R9 242 aaKnown RBP0.88□□□□□ -2.27
SCN1A-208ENST00000625916 AHDC1Q5TGY3 1603 aaPredicted RBP0.87□□□□□ -2.27
SCN1A-208ENST00000625916 TRAV6A0A075B6T7 132 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 IGHV3OR16-8A0A075B7F1 116 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 TRAV26-1A0A087WT03 109 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 IGHV1OR15-9A0A0B4J2B8 117 aa0.87□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms