RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ALG8Q9BVK2 526 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 NELFAQ9H3P2 528 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 C12orf49Q9H741 205 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 POLE4Q9NR33 117 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 PLSCR4Q9NRQ2 329 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 SLC7A10Q9NS82 523 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 MRPL22Q9NWU5 206 aaKnown RBP13.46□□□□□ -0.25
TRIM28-209ENST00000597423 LOC400499M0QZD8 3231 aa13.46□□□□□ -0.26
TRIM28-209ENST00000597423 IGKV1D-43A0A0B4J1Z2 117 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 HSPB2A8KAH6 182 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 MPZL1O95297 269 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 KRT8P05787 483 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 ALOX5APP20292 161 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 CTSSP25774 331 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 KIR2DL2P43627 348 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-209ENST00000597423 ALDH3B2P48448 385 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 PCBD1P61457 104 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 SIRPAP78324 504 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 NFATC3Q12968 1075 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 MRPL28Q13084 256 aaKnown RBP13.45□□□□□ -0.26
TRIM28-209ENST00000597423 GUSBP1Q15486 140 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 HSPB2Q16082 182 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 PCK2Q16822 640 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 CEACAM16Q2WEN9 425 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 FAM27BQ5VT28 67 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 RTL6Q6ICC9 239 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 FOXL2NBQ6ZUU3 175 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 DPY19L4Q7Z388 723 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 FAM220AQ7Z4H9 259 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 ATCAYQ86WG3 371 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 SYS1Q8N2H4 156 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 MUL1Q969V5 352 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 FOXN4Q96NZ1 517 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 ISYNA1Q9NPH2 558 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 BABAM2Q9NXR7 383 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 CLEC2DQ9UHP7 191 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 PROCRQ9UNN8 238 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 UGT2A1Q9Y4X1 527 aa13.45□□□□□ -0.26
TRIM28-209ENST00000597423 SULT1C4O75897 302 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 GPANK1O95872 356 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 PTHP01270 115 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 OR8G3PP0DMU2 310 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 GLI4P10075 376 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 PSMB9P28065 219 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 MPGP29372 298 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 CEACAM8P31997 349 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-209ENST00000597423 CDAP32320 146 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 OPRM1P35372 400 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 GBX2P52951 348 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-209ENST00000597423 HCCSP53701 268 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 DBPQ10586 325 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-209ENST00000597423 FAPQ12884 760 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 EIF2B1Q14232 305 aaKnown RBP13.44□□□□□ -0.26
TRIM28-209ENST00000597423 TIGD6Q17RP2 521 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 SYT6Q5T7P8 510 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-209ENST00000597423 XAF1Q6GPH4 301 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 ZNF544Q6NX49 715 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 DEGS2Q6QHC5 323 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 ZNF322Q6U7Q0 402 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-209ENST00000597423 DPPA2Q7Z7J5 298 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 SYT9Q86SS6 491 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-209ENST00000597423 GCNT2Q8N0V5 402 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 GJC3Q8NFK1 279 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 GATAD2BQ8WXI9 593 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 FOXB1Q99853 325 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 SFXN3Q9BWM7 321 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 MROQ9BYG7 248 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 C1orf198Q9H425 327 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 TMEM38BQ9NVV0 291 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 FAM215AQ9Y5M1 114 aa13.44□□□□□ -0.26
TRIM28-209ENST00000597423 METTL15A6NJ78 407 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 E9PLN8 166 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 J3QLW9 94 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 ATXN7O15265 892 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-209ENST00000597423 ZNF254O75437 659 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 IL18BPO95998 194 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 IGHV3-9P01782 118 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 CST2P09228 141 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 HSMCR30P0CW71 290 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 ZNF19P17023 458 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 TAS2R43P59537 309 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 ZNF85Q03923 595 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 PMPCAQ10713 525 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 MEP1BQ16820 701 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 CDONQ4KMG0 1287 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 PCSK4Q6UW60 755 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 LYPD4Q6UWN0 246 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 ZNF813Q6ZN06 617 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 RHOUQ7L0Q8 258 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 KRT77Q7Z794 578 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 SPRYD4Q8WW59 207 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-209ENST00000597423 ALKBH3Q96Q83 286 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-209ENST00000597423 MGLLQ99685 303 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 VKORC1Q9BQB6 163 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 PIGMQ9H3S5 423 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 TRIM36Q9NQ86 728 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 TAS2R16Q9NYV7 291 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 MALT1Q9UDY8 824 aa13.43□□□□□ -0.26
TRIM28-209ENST00000597423 CYB5R1Q9UHQ9 305 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms