RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 ERVK13-1Q9NX77 482 aa12.92□□□□□ -0.34
VRK3-212ENST00000596814 MALT1Q9UDY8 824 aa12.92□□□□□ -0.34
VRK3-212ENST00000596814 CLEC2DQ9UHP7 191 aa12.92□□□□□ -0.34
VRK3-212ENST00000596814 INTS1Q8N201 2190 aaKnown RBP12.92□□□□□ -0.34
VRK3-212ENST00000596814 A0A1W2PQL4 384 aaPredicted RBP12.91□□□□□ -0.34
VRK3-212ENST00000596814 ZNF670-ZNF695F2Z2N8 137 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 RPL36A-HNRNPH2H7BZ11 118 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 ZNF593O00488 134 aaPredicted RBP12.91□□□□□ -0.34
VRK3-212ENST00000596814 TNFSF13O75888 250 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 PTHP01270 115 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 LIMS3P0CW19 117 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 LIMS4P0CW20 117 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 PSKH1P11801 424 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 MSR1P21757 451 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 RPS27P42677 84 aaKnown RBP12.91□□□□□ -0.34
VRK3-212ENST00000596814 HCCSP53701 268 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 CASP6P55212 293 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 BLMHQ13867 455 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 NEDD8Q15843 81 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 FBXW9Q5XUX1 488 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 XAF1Q6GPH4 301 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 VWA1Q6PCB0 445 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 LHFPL3Q86UP9 236 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 RFLNBQ8N5W9 214 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 ALG8Q9BVK2 526 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 EMC7Q9NPA0 242 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 KCNG2Q9UJ96 466 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 LAMP5Q9UJQ1 280 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 COPS3Q9UNS2 423 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 POLR1DQ9Y2S0 133 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 TMEM14AQ9Y6G1 99 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 TMEM129A0AVI4 362 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 SCG5P05408 212 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 NPR2P20594 1047 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 CEACAM8P31997 349 aaPredicted RBP12.91□□□□□ -0.34
VRK3-212ENST00000596814 NR1H2P55055 460 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 MRPS34P82930 218 aaKnown RBP12.91□□□□□ -0.34
VRK3-212ENST00000596814 ZNF85Q03923 595 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 FAPQ12884 760 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 GALEQ14376 348 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 KCNMB1Q16558 191 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 SGCAQ16586 387 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 TEX30Q5JUR7 227 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 KLHL36Q8N4N3 616 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 NAXEQ8NCW5 288 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 OTOSQ8NHW6 89 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 FCGR1BQ92637 280 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 HTRA1Q92743 480 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 NABP1Q96AH0 204 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 FOXB1Q99853 325 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 ZNF649Q9BS31 505 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 TTTY10Q9BZA0 68 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 TMEM38BQ9NVV0 291 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 PROCRQ9UNN8 238 aa12.91□□□□□ -0.34
VRK3-212ENST00000596814 TRGV8A0A0C4DH27 118 aa12.9□□□□□ -0.34
VRK3-212ENST00000596814 ZNF99A8MXY4 864 aaPredicted RBP12.9□□□□□ -0.34
VRK3-212ENST00000596814 PHYHO14832 338 aa12.9□□□□□ -0.34
VRK3-212ENST00000596814 TMCC2O75069 709 aa12.9□□□□□ -0.34
VRK3-212ENST00000596814 SEC14L2O76054 403 aa12.9□□□□□ -0.34
VRK3-212ENST00000596814 TFAP2AP05549 437 aa12.9□□□□□ -0.34
VRK3-212ENST00000596814 LCKP06239 509 aa12.9□□□□□ -0.34
VRK3-212ENST00000596814 LSM6P62312 80 aaKnown RBP12.9□□□□□ -0.34
VRK3-212ENST00000596814 ACTA2P62736 377 aa12.9□□□□□ -0.34
VRK3-212ENST00000596814 ACTG2P63267 376 aa12.9□□□□□ -0.34
VRK3-212ENST00000596814 PCK2Q16822 640 aa12.9□□□□□ -0.34
VRK3-212ENST00000596814 SLC18B1Q6NT16 456 aa12.9□□□□□ -0.34
VRK3-212ENST00000596814 SSX6Q7RTT6 188 aa12.9□□□□□ -0.34
VRK3-212ENST00000596814 LINC00346Q8IVM7 164 aa12.9□□□□□ -0.34
VRK3-212ENST00000596814 NANOGP1Q8N7R0 232 aa12.9□□□□□ -0.34
VRK3-212ENST00000596814 ZNF454Q8N9F8 522 aa12.9□□□□□ -0.34
VRK3-212ENST00000596814 RORBQ92753 470 aa12.9□□□□□ -0.34
VRK3-212ENST00000596814 MRPL48Q96GC5 212 aaKnown RBP12.9□□□□□ -0.34
VRK3-212ENST00000596814 SFXN3Q9BWM7 321 aa12.9□□□□□ -0.34
VRK3-212ENST00000596814 CDADC1Q9BWV3 514 aa12.9□□□□□ -0.34
VRK3-212ENST00000596814 KLHDC2Q9Y2U9 406 aa12.9□□□□□ -0.34
VRK3-212ENST00000596814 EPG5Q9HCE0 2579 aa12.9□□□□□ -0.34
VRK3-212ENST00000596814 IGSF10Q6WRI0 2623 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 COL6A6A6NMZ7 2263 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 CNOT4O95628 575 aaKnown RBP12.89□□□□□ -0.35
VRK3-212ENST00000596814 B4GALT1P15291 398 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 JUNBP17275 347 aaPredicted RBP12.89□□□□□ -0.35
VRK3-212ENST00000596814 ALOX5APP20292 161 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 CTSSP25774 331 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 CD79BP40259 229 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 WNT4P56705 351 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 PMPCAQ10713 525 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 MED22Q15528 200 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 OR2G6Q5TZ20 316 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 C9orf135Q5VTT2 229 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 UBE2UQ5VVX9 321 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 TMPRSS11AQ6ZMR5 421 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 ZNF367Q7RTV3 350 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 BTLAQ7Z6A9 289 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 ATCAYQ86WG3 371 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 OR52N1Q8NH53 320 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 THEM6Q8WUY1 208 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 MUL1Q969V5 352 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 STARD4Q96DR4 205 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 MYCBPQ99417 103 aaPredicted RBP12.89□□□□□ -0.35
VRK3-212ENST00000596814 SIAEQ9HAT2 523 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms