RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 HMGB1P1B2RPK0 211 aaPredicted RBP20.32■□□□□ 0.84
LSM4-202ENST00000593564 FXYD1O00168 92 aa20.32■□□□□ 0.84
LSM4-202ENST00000593564 EDF1O60869 148 aaKnown RBP20.32■□□□□ 0.84
LSM4-202ENST00000593564 SHOX2O60902 331 aaPredicted RBP20.32■□□□□ 0.84
LSM4-202ENST00000593564 RGS9O75916 674 aaPredicted RBP20.32■□□□□ 0.84
LSM4-202ENST00000593564 IGHV1-46P01743 117 aa20.32■□□□□ 0.84
LSM4-202ENST00000593564 GDI2P50395 445 aaKnown RBP20.32■□□□□ 0.84
LSM4-202ENST00000593564 ARFIP2P53365 341 aa20.32■□□□□ 0.84
LSM4-202ENST00000593564 PSG4Q00888 419 aa20.32■□□□□ 0.84
LSM4-202ENST00000593564 CD47Q08722 323 aa20.32■□□□□ 0.84
LSM4-202ENST00000593564 LAPTM4AQ15012 233 aa20.32■□□□□ 0.84
LSM4-202ENST00000593564 TAF11Q15544 211 aa20.32■□□□□ 0.84
LSM4-202ENST00000593564 TMEM255AQ5JRV8 349 aa20.32■□□□□ 0.84
LSM4-202ENST00000593564 SPATA46Q5T0L3 261 aa20.32■□□□□ 0.84
LSM4-202ENST00000593564 THEM4Q5T1C6 240 aa20.32■□□□□ 0.84
LSM4-202ENST00000593564 MBNL2Q5VZF2 373 aaKnown RBP20.32■□□□□ 0.84
LSM4-202ENST00000593564 SLC25A47Q6Q0C1 308 aa20.32■□□□□ 0.84
LSM4-202ENST00000593564 C1orf174Q8IYL3 243 aa20.32■□□□□ 0.84
LSM4-202ENST00000593564 AKR7LQ8NHP1 331 aa20.32■□□□□ 0.84
LSM4-202ENST00000593564 IPCEF1Q8WWN9 437 aaPredicted RBP20.32■□□□□ 0.84
LSM4-202ENST00000593564 NSMAFQ92636 917 aa20.32■□□□□ 0.84
LSM4-202ENST00000593564 ECSITQ9BQ95 431 aa20.32■□□□□ 0.84
LSM4-202ENST00000593564 ALG12Q9BV10 488 aa20.32■□□□□ 0.84
LSM4-202ENST00000593564 PLA2G12AQ9BZM1 189 aa20.32■□□□□ 0.84
LSM4-202ENST00000593564 WNK2Q9Y3S1 2297 aa20.32■□□□□ 0.84
LSM4-202ENST00000593564 PLSCR5A0PG75 271 aa20.31■□□□□ 0.84
LSM4-202ENST00000593564 TRIM77I1YAP6 450 aa20.31■□□□□ 0.84
LSM4-202ENST00000593564 SPRY3O43610 288 aa20.31■□□□□ 0.84
LSM4-202ENST00000593564 IFNA14P01570 189 aa20.31■□□□□ 0.84
LSM4-202ENST00000593564 MAKP20794 623 aa20.31■□□□□ 0.84
LSM4-202ENST00000593564 MPV17P39210 176 aa20.31■□□□□ 0.84
LSM4-202ENST00000593564 SGCAQ16586 387 aa20.31■□□□□ 0.84
LSM4-202ENST00000593564 FAM27BQ5VT28 67 aa20.31■□□□□ 0.84
LSM4-202ENST00000593564 ERICH5Q6P6B1 374 aa20.31■□□□□ 0.84
LSM4-202ENST00000593564 PEG10Q86TG7 708 aaKnown RBP20.31■□□□□ 0.84
LSM4-202ENST00000593564 SLC25A40Q8TBP6 338 aa20.31■□□□□ 0.84
LSM4-202ENST00000593564 LRRC58Q96CX6 371 aa20.31■□□□□ 0.84
LSM4-202ENST00000593564 JMJD8Q96S16 334 aa20.31■□□□□ 0.84
LSM4-202ENST00000593564 RBM4Q9BWF3 364 aaKnown RBP20.31■□□□□ 0.84
LSM4-202ENST00000593564 HIF3AQ9Y2N7 669 aa20.31■□□□□ 0.84
LSM4-202ENST00000593564 TMEM89A2RUT3 159 aa20.3■□□□□ 0.84
LSM4-202ENST00000593564 H3BSA7 217 aa20.3■□□□□ 0.84
LSM4-202ENST00000593564 ICMTO60725 284 aa20.3■□□□□ 0.84
LSM4-202ENST00000593564 ADH4P08319 380 aa20.3■□□□□ 0.84
LSM4-202ENST00000593564 OR1E2P47887 323 aa20.3■□□□□ 0.84
LSM4-202ENST00000593564 ERVK-25P63136 954 aa20.3■□□□□ 0.84
LSM4-202ENST00000593564 ALG10Q5BKT4 473 aa20.3■□□□□ 0.84
LSM4-202ENST00000593564 COQ5Q5HYK3 327 aa20.3■□□□□ 0.84
LSM4-202ENST00000593564 DCAF12L2Q5VW00 463 aa20.3■□□□□ 0.84
LSM4-202ENST00000593564 FNDC8Q8TC99 324 aa20.3■□□□□ 0.84
LSM4-202ENST00000593564 KLF14Q8TD94 323 aaPredicted RBP20.3■□□□□ 0.84
LSM4-202ENST00000593564 CCL17Q92583 94 aa20.3■□□□□ 0.84
LSM4-202ENST00000593564 OR2H1Q9GZK4 316 aa20.3■□□□□ 0.84
LSM4-202ENST00000593564 CYSLTR2Q9NS75 346 aa20.3■□□□□ 0.84
LSM4-202ENST00000593564 CGGBP1Q9UFW8 167 aaPredicted RBP20.3■□□□□ 0.84
LSM4-202ENST00000593564 HTR3EA5X5Y0 456 aa20.29■□□□□ 0.84
LSM4-202ENST00000593564 ZSCAN5BA6NJL1 495 aa20.29■□□□□ 0.84
LSM4-202ENST00000593564 UBOX5O94941 541 aa20.29■□□□□ 0.84
LSM4-202ENST00000593564 NPPAP01160 153 aa20.29■□□□□ 0.84
LSM4-202ENST00000593564 GATA3P23771 443 aa20.29■□□□□ 0.84
LSM4-202ENST00000593564 LIPAP38571 399 aa20.29■□□□□ 0.84
LSM4-202ENST00000593564 RPL27P61353 136 aaKnown RBP20.29■□□□□ 0.84
LSM4-202ENST00000593564 SLC3A1Q07837 685 aa20.29■□□□□ 0.84
LSM4-202ENST00000593564 TOP3AQ13472 1001 aaPredicted RBP20.29■□□□□ 0.84
LSM4-202ENST00000593564 RFPL4BQ6ZWI9 263 aa20.29■□□□□ 0.84
LSM4-202ENST00000593564 NANPQ8TBE9 248 aa20.29■□□□□ 0.84
LSM4-202ENST00000593564 GCDHQ92947 438 aaPredicted RBP20.29■□□□□ 0.84
LSM4-202ENST00000593564 ZNF583Q96ND8 569 aa20.29■□□□□ 0.84
LSM4-202ENST00000593564 RBP7Q96R05 134 aa20.29■□□□□ 0.84
LSM4-202ENST00000593564 GAL3ST1Q99999 423 aa20.29■□□□□ 0.84
LSM4-202ENST00000593564 SUCNR1Q9BXA5 334 aa20.29■□□□□ 0.84
LSM4-202ENST00000593564 OR2J1Q9GZK6 312 aa20.29■□□□□ 0.84
LSM4-202ENST00000593564 EGLN1Q9GZT9 426 aa20.29■□□□□ 0.84
LSM4-202ENST00000593564 WNT5BQ9H1J7 359 aa20.29■□□□□ 0.84
LSM4-202ENST00000593564 PIP5K1CO60331 668 aa20.28■□□□□ 0.84
LSM4-202ENST00000593564 IGHMP01871 453 aa20.28■□□□□ 0.84
LSM4-202ENST00000593564 CST2P09228 141 aa20.28■□□□□ 0.84
LSM4-202ENST00000593564 LAP3P28838 519 aa20.28■□□□□ 0.84
LSM4-202ENST00000593564 LIMS1P48059 325 aa20.28■□□□□ 0.84
LSM4-202ENST00000593564 CYBRD1Q53TN4 286 aa20.28■□□□□ 0.84
LSM4-202ENST00000593564 FAM205BPQ63HN1 556 aa20.28■□□□□ 0.84
LSM4-202ENST00000593564 FOXL2NBQ6ZUU3 175 aa20.28■□□□□ 0.84
LSM4-202ENST00000593564 ALDH16A1Q8IZ83 802 aa20.28■□□□□ 0.84
LSM4-202ENST00000593564 ABHD4Q8TB40 342 aa20.28■□□□□ 0.84
LSM4-202ENST00000593564 BPIFA2Q96DR5 249 aa20.28■□□□□ 0.84
LSM4-202ENST00000593564 ZMYND19Q96E35 227 aaPredicted RBP20.28■□□□□ 0.84
LSM4-202ENST00000593564 MRGBPQ9NV56 204 aa20.28■□□□□ 0.84
LSM4-202ENST00000593564 TIMM10BQ9Y5J6 103 aa20.28■□□□□ 0.84
LSM4-202ENST00000593564 ADRA2CP18825 462 aa20.27■□□□□ 0.84
LSM4-202ENST00000593564 PCBD1P61457 104 aa20.27■□□□□ 0.84
LSM4-202ENST00000593564 PPP1CBP62140 327 aa20.27■□□□□ 0.84
LSM4-202ENST00000593564 ST3GAL3Q11203 375 aa20.27■□□□□ 0.84
LSM4-202ENST00000593564 CLDN22Q8N7P3 220 aa20.27■□□□□ 0.84
LSM4-202ENST00000593564 C10orf82Q8WW14 230 aa20.27■□□□□ 0.84
LSM4-202ENST00000593564 DIRC2Q96SL1 478 aa20.27■□□□□ 0.84
LSM4-202ENST00000593564 KLHL21Q9UJP4 597 aa20.27■□□□□ 0.84
LSM4-202ENST00000593564 ZDHHC8Q9ULC8 765 aa20.27■□□□□ 0.84
LSM4-202ENST00000593564 BBIP1A8MTZ0 92 aa20.26■□□□□ 0.83
LSM4-202ENST00000593564 MRASO14807 208 aa20.26■□□□□ 0.83
LSM4-202ENST00000593564 CD55P08174 381 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms