RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 PPA2Q9H2U2 334 aa8.88□□□□□ -0.99
LIG3-216ENST00000593099 ASH2LQ9UBL3 628 aa8.88□□□□□ -0.99
LIG3-216ENST00000593099 TCRBV5S2A0A599 114 aa8.88□□□□□ -0.99
LIG3-216ENST00000593099 PRSS37A4D1T9 235 aa8.88□□□□□ -0.99
LIG3-216ENST00000593099 NTN3O00634 580 aaPredicted RBP8.88□□□□□ -0.99
LIG3-216ENST00000593099 CELA2AP08217 269 aa8.88□□□□□ -0.99
LIG3-216ENST00000593099 HOXB9P17482 250 aaPredicted RBP8.88□□□□□ -0.99
LIG3-216ENST00000593099 LAP3P28838 519 aa8.88□□□□□ -0.99
LIG3-216ENST00000593099 HTR2BP41595 481 aa8.88□□□□□ -0.99
LIG3-216ENST00000593099 SLC16A9Q7RTY1 509 aa8.88□□□□□ -0.99
LIG3-216ENST00000593099 MIB2Q96AX9 1013 aa8.88□□□□□ -0.99
LIG3-216ENST00000593099 EMC7Q9NPA0 242 aa8.88□□□□□ -0.99
LIG3-216ENST00000593099 MEPEQ9NQ76 525 aaPredicted RBP8.88□□□□□ -0.99
LIG3-216ENST00000593099 KCNIP1Q9NZI2 227 aa8.88□□□□□ -0.99
LIG3-216ENST00000593099 NUFIP1Q9UHK0 495 aaKnown RBP8.88□□□□□ -0.99
LIG3-216ENST00000593099 PIKFYVEQ9Y2I7 2098 aa8.88□□□□□ -0.99
LIG3-216ENST00000593099 A0A096LPE4 126 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 A0A1W2PPZ6 126 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 E9PI62 339 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 ENSAO43768 121 aaKnown RBP8.87□□□□□ -0.99
LIG3-216ENST00000593099 HIST1H1CP16403 213 aaKnown RBP8.87□□□□□ -0.99
LIG3-216ENST00000593099 RAC3P60763 192 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 HERV-K104P61576 105 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 ZNF404Q494X3 552 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 ZNF684Q5T5D7 378 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 C19orf48Q6RUI8 117 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 SLC22A25Q6T423 547 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 NPSR1Q6W5P4 371 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 CENPSQ8N2Z9 138 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 TRMT10AQ8TBZ6 339 aaKnown RBP8.87□□□□□ -0.99
LIG3-216ENST00000593099 GGHQ92820 318 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 COG8Q96MW5 612 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 SLCO5A1Q9H2Y9 848 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 PI4KAP42356 2102 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 CACNA1CQ13936 2221 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 TRAV20A0A0B4J274 112 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 ARRDC5A6NEK1 342 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 FAM90A27PA6NNH2 459 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 SLC16A6O15403 523 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 SEC14L2O76054 403 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 TMIGD3P0DMS9 266 aaPredicted RBP8.87□□□□□ -0.99
LIG3-216ENST00000593099 PITPNBP48739 271 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 CD226Q15762 336 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 NTRK2Q16620 822 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 ZXDCQ2QGD7 858 aaPredicted RBP8.87□□□□□ -0.99
LIG3-216ENST00000593099 CEACAM16Q2WEN9 425 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 GDPGP1Q6ZNW5 385 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 PPP1R32Q7Z5V6 425 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 GTPBP8Q8N3Z3 284 aaPredicted RBP8.87□□□□□ -0.99
LIG3-216ENST00000593099 GPR32P1Q8NGA4 272 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 LILRB4Q8NHJ6 448 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 PRR7Q8TB68 274 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 RND1Q92730 232 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 EXTL1Q92935 676 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 NIT2Q9NQR4 276 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 A4GNTQ9UNA3 340 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 PRKYO43930 277 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 NFATC3Q12968 1075 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 ACSM3Q53FZ2 586 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 ARSJQ5FYB0 599 aaPredicted RBP8.87□□□□□ -0.99
LIG3-216ENST00000593099 ZMAT1Q5H9K5 638 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 PGAP1Q75T13 922 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 ZNF420Q8TAQ5 688 aaPredicted RBP8.87□□□□□ -0.99
LIG3-216ENST00000593099 NRG4Q8WWG1 115 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 EGLN1Q9GZT9 426 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 GLRX2Q9NS18 164 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 MAB21L2Q9Y586 359 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 KLK4Q9Y5K2 254 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 LRRTM2O43300 516 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 COX6A1P12074 109 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 TMBIM6P55061 237 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 PCBP3P57721 371 aaKnown RBP8.87□□□□□ -0.99
LIG3-216ENST00000593099 HEPHL1Q6MZM0 1159 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 PXKQ7Z7A4 578 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 LGALS12Q96DT0 336 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 DUS3LQ96G46 650 aaKnown RBP8.87□□□□□ -0.99
LIG3-216ENST00000593099 ALKBH3Q96Q83 286 aaPredicted RBP8.87□□□□□ -0.99
LIG3-216ENST00000593099 KCNG2Q9UJ96 466 aa8.87□□□□□ -0.99
LIG3-216ENST00000593099 TMEM212A6NML5 194 aa8.86□□□□□ -0.99
LIG3-216ENST00000593099 M0R1B8 84 aa8.86□□□□□ -0.99
LIG3-216ENST00000593099 NDUFS8O00217 210 aa8.86□□□□□ -0.99
LIG3-216ENST00000593099 PTGER4P35408 488 aa8.86□□□□□ -0.99
LIG3-216ENST00000593099 CSRP3P50461 194 aa8.86□□□□□ -0.99
LIG3-216ENST00000593099 SNRPGP62308 76 aaKnown RBP8.86□□□□□ -0.99
LIG3-216ENST00000593099 PCOLCEQ15113 449 aa8.86□□□□□ -0.99
LIG3-216ENST00000593099 SMN1Q16637 294 aaKnown RBP8.86□□□□□ -0.99
LIG3-216ENST00000593099 ATP1A1-AS1Q5TC04 95 aa8.86□□□□□ -0.99
LIG3-216ENST00000593099 C17orf82Q86X59 251 aaPredicted RBP8.86□□□□□ -0.99
LIG3-216ENST00000593099 LACC1Q8IV20 430 aa8.86□□□□□ -0.99
LIG3-216ENST00000593099 SULF2Q8IWU5 870 aa8.86□□□□□ -0.99
LIG3-216ENST00000593099 ZNF615Q8N8J6 731 aa8.86□□□□□ -0.99
LIG3-216ENST00000593099 RHOXF1Q8NHV9 184 aa8.86□□□□□ -0.99
LIG3-216ENST00000593099 TAAR8Q969N4 342 aa8.86□□□□□ -0.99
LIG3-216ENST00000593099 TEAD3Q99594 435 aa8.86□□□□□ -0.99
LIG3-216ENST00000593099 SLC26A1Q9H2B4 701 aa8.86□□□□□ -0.99
LIG3-216ENST00000593099 RAB9BQ9NP90 201 aa8.86□□□□□ -0.99
LIG3-216ENST00000593099 DECR2Q9NUI1 292 aa8.86□□□□□ -0.99
LIG3-216ENST00000593099 FBXL3Q9UKT7 428 aa8.86□□□□□ -0.99
LIG3-216ENST00000593099 ZNF281Q9Y2X9 895 aa8.86□□□□□ -0.99
LIG3-216ENST00000593099 C7orf72A4D263 438 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms