RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 IL17RDQ8NFM7 739 aa17.36■□□□□ 0.37
SS18-218ENST00000581021 FNDC8Q8TC99 324 aa17.36■□□□□ 0.37
SS18-218ENST00000581021 SLCO4A1Q96BD0 722 aa17.36■□□□□ 0.37
SS18-218ENST00000581021 TSSK2Q96PF2 358 aa17.36■□□□□ 0.37
SS18-218ENST00000581021 ERMAPQ96PL5 475 aaPredicted RBP17.36■□□□□ 0.37
SS18-218ENST00000581021 SMR3AQ99954 134 aa17.36■□□□□ 0.37
SS18-218ENST00000581021 NDEL1Q9GZM8 345 aa17.36■□□□□ 0.37
SS18-218ENST00000581021 RNF121Q9H920 327 aa17.36■□□□□ 0.37
SS18-218ENST00000581021 POLE4Q9NR33 117 aa17.36■□□□□ 0.37
SS18-218ENST00000581021 RTTNQ86VV8 2226 aa17.36■□□□□ 0.37
SS18-218ENST00000581021 TCRBV3S1A0A5B6 114 aa17.35■□□□□ 0.37
SS18-218ENST00000581021 TMEM129A0AVI4 362 aa17.35■□□□□ 0.37
SS18-218ENST00000581021 H7C1Q1 480 aa17.35■□□□□ 0.37
SS18-218ENST00000581021 ENTPD5O75356 428 aa17.35■□□□□ 0.37
SS18-218ENST00000581021 LY6HO94772 140 aa17.35■□□□□ 0.37
SS18-218ENST00000581021 CCNB2O95067 398 aa17.35■□□□□ 0.37
SS18-218ENST00000581021 APEX1P27695 318 aaKnown RBP17.35■□□□□ 0.37
SS18-218ENST00000581021 SLC6A6P31641 620 aa17.35■□□□□ 0.37
SS18-218ENST00000581021 TMEM53Q6P2H8 277 aa17.35■□□□□ 0.37
SS18-218ENST00000581021 ADCK1Q86TW2 530 aa17.35■□□□□ 0.37
SS18-218ENST00000581021 AKR7LQ8NHP1 331 aa17.35■□□□□ 0.37
SS18-218ENST00000581021 TRMT61AQ96FX7 289 aaKnown RBP17.35■□□□□ 0.37
SS18-218ENST00000581021 COX4I2Q96KJ9 171 aa17.35■□□□□ 0.37
SS18-218ENST00000581021 ZNF416Q9BWM5 594 aa17.35■□□□□ 0.37
SS18-218ENST00000581021 NUAK2Q9H093 628 aa17.35■□□□□ 0.37
SS18-218ENST00000581021 WNT5BQ9H1J7 359 aa17.35■□□□□ 0.37
SS18-218ENST00000581021 PLK3Q9H4B4 646 aa17.35■□□□□ 0.37
SS18-218ENST00000581021 GSX1Q9H4S2 264 aaPredicted RBP17.35■□□□□ 0.37
SS18-218ENST00000581021 REEP1Q9H902 201 aa17.35■□□□□ 0.37
SS18-218ENST00000581021 CDH10Q9Y6N8 788 aa17.35■□□□□ 0.37
SS18-218ENST00000581021 ARPC3O15145 178 aa17.34■□□□□ 0.37
SS18-218ENST00000581021 AHCYL1O43865 530 aa17.34■□□□□ 0.37
SS18-218ENST00000581021 SLC16A7O60669 478 aa17.34■□□□□ 0.37
SS18-218ENST00000581021 MPZL1O95297 269 aa17.34■□□□□ 0.37
SS18-218ENST00000581021 GPANK1O95872 356 aa17.34■□□□□ 0.37
SS18-218ENST00000581021 TP53P04637 393 aaPredicted RBP17.34■□□□□ 0.37
SS18-218ENST00000581021 CST2P09228 141 aa17.34■□□□□ 0.37
SS18-218ENST00000581021 HIST1H1CP16403 213 aaKnown RBP17.34■□□□□ 0.37
SS18-218ENST00000581021 MSR1P21757 451 aa17.34■□□□□ 0.37
SS18-218ENST00000581021 RPS6KA3P51812 740 aa17.34■□□□□ 0.37
SS18-218ENST00000581021 PSG4Q00888 419 aa17.34■□□□□ 0.37
SS18-218ENST00000581021 MICAQ29983 383 aa17.34■□□□□ 0.37
SS18-218ENST00000581021 CLEC12AQ5QGZ9 265 aa17.34■□□□□ 0.37
SS18-218ENST00000581021 SPATA24Q86W54 205 aa17.34■□□□□ 0.37
SS18-218ENST00000581021 SVOPLQ8N434 492 aa17.34■□□□□ 0.37
SS18-218ENST00000581021 OR4K13Q8NH42 304 aa17.34■□□□□ 0.37
SS18-218ENST00000581021 IFT27Q9BW83 186 aa17.34■□□□□ 0.37
SS18-218ENST00000581021 OR2H1Q9GZK4 316 aa17.34■□□□□ 0.37
SS18-218ENST00000581021 FBXL3Q9UKT7 428 aa17.34■□□□□ 0.37
SS18-218ENST00000581021 LOC100509620A0A075B734 347 aa17.33■□□□□ 0.36
SS18-218ENST00000581021 IGLV1-36A0A0B4J1U3 117 aa17.33■□□□□ 0.36
SS18-218ENST00000581021 BHLHE40O14503 412 aa17.33■□□□□ 0.36
SS18-218ENST00000581021 TNK1Q13470 666 aa17.33■□□□□ 0.36
SS18-218ENST00000581021 CLEC12BQ2HXU8 276 aa17.33■□□□□ 0.36
SS18-218ENST00000581021 LRP11Q86VZ4 500 aa17.33■□□□□ 0.36
SS18-218ENST00000581021 POP5Q969H6 163 aaKnown RBP17.33■□□□□ 0.36
SS18-218ENST00000581021 SORCS2Q96PQ0 1159 aa17.33■□□□□ 0.36
SS18-218ENST00000581021 NMNAT3Q96T66 252 aa17.33■□□□□ 0.36
SS18-218ENST00000581021 DOK1Q99704 481 aa17.33■□□□□ 0.36
SS18-218ENST00000581021 MRPL37Q9BZE1 423 aaKnown RBP17.33■□□□□ 0.36
SS18-218ENST00000581021 COA3Q9Y2R0 106 aaPredicted RBP17.33■□□□□ 0.36
SS18-218ENST00000581021 NF1P21359 2839 aa17.33■□□□□ 0.36
SS18-218ENST00000581021 SETD2Q9BYW2 2564 aaPredicted RBP17.32■□□□□ 0.36
SS18-218ENST00000581021 B9A039 149 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 FKBP6O75344 327 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 STAMBPO95630 424 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 CST1P01037 141 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 FAM157BP0CG42 384 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 ERVS71-1P61550 626 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 HSF2Q03933 536 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 SLC35F1Q5T1Q4 408 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 ZNF774Q6NX45 483 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 LEG1Q6P5S2 330 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 RASSF6Q6ZTQ3 369 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 HS3ST5Q8IZT8 346 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 OR6V1Q8N148 313 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 ZCCHC24Q8N2G6 241 aaKnown RBP17.32■□□□□ 0.36
SS18-218ENST00000581021 LINC00471Q8N535 108 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 OR10G2Q8NGC3 310 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 C18orf12Q96KH6 178 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 POM121L2Q96KW2 1035 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 NIPSNAP1Q9BPW8 284 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 DGCR6LQ9BY27 220 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 LRMDAQ9H2I8 198 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 OR51B6Q9H340 312 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 FN3KQ9H479 309 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 RERGLQ9H628 205 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 CCNB1IP1Q9NPC3 277 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 IL20Q9NYY1 176 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 MYEF2Q9P2K5 600 aaKnown RBP17.32■□□□□ 0.36
SS18-218ENST00000581021 FZR1Q9UM11 496 aa17.32■□□□□ 0.36
SS18-218ENST00000581021 OR6C68A6NDL8 312 aa17.31■□□□□ 0.36
SS18-218ENST00000581021 SSX4O60224 188 aa17.31■□□□□ 0.36
SS18-218ENST00000581021 KHDRBS3O75525 346 aaKnown RBP17.31■□□□□ 0.36
SS18-218ENST00000581021 SOX14O95416 240 aa17.31■□□□□ 0.36
SS18-218ENST00000581021 SNAP29O95721 258 aa17.31■□□□□ 0.36
SS18-218ENST00000581021 GAAP10253 952 aa17.31■□□□□ 0.36
SS18-218ENST00000581021 FOSL1P15407 271 aa17.31■□□□□ 0.36
SS18-218ENST00000581021 GLRXP35754 106 aa17.31■□□□□ 0.36
SS18-218ENST00000581021 WNT5AP41221 380 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms