RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 TACSTD2P09758 323 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 CLEC2LP0C7M8 214 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 CD53P19397 219 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 FGF9P31371 208 aaPredicted RBP9.33□□□□□ -0.92
SS18-217ENST00000580958 RPS19P39019 145 aaKnown RBP9.33□□□□□ -0.92
SS18-217ENST00000580958 TGM4P49221 684 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 SELENOPP49908 381 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 GDI2P50395 445 aaKnown RBP9.33□□□□□ -0.92
SS18-217ENST00000580958 EGR3Q06889 387 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 RASGEF1BQ0VAM2 473 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 INSL4Q14641 139 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 TRAM1Q15629 374 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 C3AR1Q16581 482 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 HIST3H3Q16695 136 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 TEX30Q5JUR7 227 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 PHYHD1Q5SRE7 291 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 LRFN4Q6PJG9 635 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 BRICD5Q6PL45 260 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 TMEM91Q6ZNR0 172 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 SPATC1Q76KD6 591 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 FCRLAQ7L513 359 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 KCTD20Q7Z5Y7 419 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 LINC00346Q8IVM7 164 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 TMEM123Q8N131 208 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 MCFD2Q8NI22 146 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 FNDC8Q8TC99 324 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 ASB17Q8WXJ9 295 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 CPNE4Q96A23 557 aaPredicted RBP9.33□□□□□ -0.92
SS18-217ENST00000580958 PNPLA2Q96AD5 504 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 PGLYRP3Q96LB9 341 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 KCTD7Q96MP8 289 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 OR8B4Q96RC9 309 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 TTYH2Q9BSA4 534 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 ABHD6Q9BV23 337 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 SLIRPQ9GZT3 109 aaKnown RBP9.33□□□□□ -0.92
SS18-217ENST00000580958 LDAHQ9H6V9 325 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 SEC61A2Q9H9S3 476 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 EMC7Q9NPA0 242 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 GALNT8Q9NY28 637 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 GLTPQ9NZD2 209 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 KLHL9Q9P2J3 617 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 SPRR3Q9UBC9 169 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 GSTK1Q9Y2Q3 226 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 MSRB2Q9Y3D2 182 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 FLVCR1Q9Y5Y0 555 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 SVILO95425 2214 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 TRGV5A0A0B4J1U4 118 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 TRBV2A0A0J9YWF9 115 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 TFECO14948 347 aaPredicted RBP9.32□□□□□ -0.92
SS18-217ENST00000580958 SULT1C4O75897 302 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 ZNF432O94892 652 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 SYNGR4O95473 234 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 ACTL6AO96019 429 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 HRGP04196 525 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 NR2C1P13056 603 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 NANOS3P60323 173 aaKnown RBP9.32□□□□□ -0.92
SS18-217ENST00000580958 MXD1Q05195 221 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 BCL2A1Q16548 175 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 PCK2Q16822 640 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 ZNF404Q494X3 552 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 CCDC58Q4VC31 144 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 C10orf128Q5T292 105 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 LIPNQ5VXI9 398 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 LRRN1Q6UXK5 716 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 C20orf196Q8IYI0 205 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 ZADH2Q8N4Q0 377 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 OR13C5Q8NGS8 318 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 OR52N5Q8NH56 324 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 NEIL3Q8TAT5 605 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 ABHD4Q8TB40 342 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 RPS4Y2Q8TD47 263 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 ZFAND2BQ8WV99 257 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 HSD17B8Q92506 261 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 HTRA1Q92743 480 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 GHSRQ92847 366 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 SMIM19Q96E16 107 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 COQ7Q99807 217 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 CDADC1Q9BWV3 514 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 NXF2Q9GZY0 626 aaKnown RBP9.32□□□□□ -0.92
SS18-217ENST00000580958 ZDHHC11Q9H8X9 412 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 ELOVL3Q9HB03 270 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 SNTG1Q9NSN8 517 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 UGT2A1Q9Y4X1 527 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 DOCK7Q96N67 2140 aa9.32□□□□□ -0.92
SS18-217ENST00000580958 A0A1B0GTH9 108 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 SMIM30A4D0T7 59 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 HSPB2A8KAH6 182 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 ST8SIA5O15466 376 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 SLC43A1O75387 559 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 AQP8O94778 261 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 IL1AP01583 271 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 CD1AP06126 327 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 ZNF24P17028 368 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 GALP22466 123 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 CDAP32320 146 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 NTF4P34130 210 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 SDC2P34741 201 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 OPRL1P41146 370 aa9.31□□□□□ -0.92
SS18-217ENST00000580958 ZNF133P52736 654 aaPredicted RBP9.31□□□□□ -0.92
SS18-217ENST00000580958 MRPL28Q13084 256 aaKnown RBP9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms