RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 H0YJX3 145 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 KHDRBS3O75525 346 aaKnown RBP8.1□□□□□ -1.11
VPS35-211ENST00000569950 IGLV1-44P01699 117 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 HMGN1P05114 100 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 ADRA2AP08913 450 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 PATE4P0C8F1 98 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 CDH2P19022 906 aaPredicted RBP8.1□□□□□ -1.11
VPS35-211ENST00000569950 ANOS1P23352 680 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 LAP3P28838 519 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 RAD23AP54725 363 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 ISL1P61371 349 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 SNRPGP62308 76 aaKnown RBP8.1□□□□□ -1.11
VPS35-211ENST00000569950 KEAP1Q14145 624 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 SNAPC1Q16533 368 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 NRN1LQ496H8 165 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 TIMM23BQ5SRD1 257 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 SLC25A30Q5SVS4 291 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 ZNF813Q6ZN06 617 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 CXXC5Q7LFL8 322 aaKnown RBP8.1□□□□□ -1.11
VPS35-211ENST00000569950 JAZF1Q86VZ6 243 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 TIGD4Q8IY51 512 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 ZNF295-AS1Q8N0V1 137 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 C17orf78Q8N4C9 275 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 TCEANCQ8N8B7 351 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 OR10S1Q8NGN2 331 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 RHOXF1Q8NHV9 184 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 FNDC8Q8TC99 324 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 C11orf40Q8WZ69 217 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 RBP7Q96R05 134 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 IL4I1Q96RQ9 567 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 SH3GL3Q99963 347 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 SPOCK3Q9BQ16 436 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 ADI1Q9BV57 179 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 ZNF416Q9BWM5 594 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 HDHD5Q9BXW7 423 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 NDEL1Q9GZM8 345 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 SRA1Q9HD15 236 aaKnown RBP8.1□□□□□ -1.11
VPS35-211ENST00000569950 CRIM1Q9NZV1 1036 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 CRNNQ9UBG3 495 aaPredicted RBP8.1□□□□□ -1.11
VPS35-211ENST00000569950 ENOPH1Q9UHY7 261 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 CACNA1DQ01668 2161 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 MAP1AP78559 2803 aaPredicted RBP8.09□□□□□ -1.11
VPS35-211ENST00000569950 SH3D21A4FU49 640 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 TVP23AA6NH52 213 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 PRR32B1ATL7 298 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 PRSS44E7EML9 344 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 TLX2O43763 284 aaPredicted RBP8.09□□□□□ -1.11
VPS35-211ENST00000569950 RENP00797 406 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 IGKV3-15P01624 115 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 HLA-HP01893 362 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 HRGP04196 525 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 CELA3BP08861 270 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 ZNF3P17036 446 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 CRABP1P29762 137 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 RSPO1Q2MKA7 263 aaPredicted RBP8.09□□□□□ -1.11
VPS35-211ENST00000569950 ZNF691Q5VV52 312 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 OR7E24Q6IFN5 339 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 IZUMO2Q6UXV1 221 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 ABHD12BQ7Z5M8 362 aaPredicted RBP8.09□□□□□ -1.11
VPS35-211ENST00000569950 GLB1L2Q8IW92 636 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 ZNF511Q8NB15 262 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 STEAP2Q8NFT2 490 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 OR8J1Q8NGP2 316 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 FAM81AQ8TBF8 368 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 ZNF582Q96NG8 517 aaPredicted RBP8.09□□□□□ -1.11
VPS35-211ENST00000569950 AMELYQ99218 206 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 WDR76Q9H967 626 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 SIAEQ9HAT2 523 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 PNRC2Q9NPJ4 139 aaKnown RBP8.09□□□□□ -1.11
VPS35-211ENST00000569950 B3GAT2Q9NPZ5 323 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 KLHDC2Q9Y2U9 406 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 PCDHGB5Q9Y5G0 923 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 COMMD3-BMI1R4GMX3 469 aa8.09□□□□□ -1.11
VPS35-211ENST00000569950 A0A1W2PPL8 197 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 DPRXA6NFQ7 191 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 PRR23D1E9PI22 279 aaPredicted RBP8.08□□□□□ -1.12
VPS35-211ENST00000569950 H0YAE9 185 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 J3QRE1 110 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 PRODHO43272 600 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 SELENOFO60613 162 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 ENTPD6O75354 484 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 KRT33AO76009 404 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 GLCEO94923 617 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 IFNGP01579 166 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 CST2P09228 141 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 PRR23D2P0DMB1 279 aaPredicted RBP8.08□□□□□ -1.12
VPS35-211ENST00000569950 OR8G3PP0DMU2 310 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 HOXB1P14653 301 aaPredicted RBP8.08□□□□□ -1.12
VPS35-211ENST00000569950 ZNF14P17017 642 aaPredicted RBP8.08□□□□□ -1.12
VPS35-211ENST00000569950 ZNF32P17041 273 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 MSR1P21757 451 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 CRYGSP22914 178 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 IL32P24001 234 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 GSTT1P30711 240 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 CAPGP40121 348 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 RPS27P42677 84 aaKnown RBP8.08□□□□□ -1.12
VPS35-211ENST00000569950 HSF2Q03933 536 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 GGTLC2Q14390 218 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 MAD2L1BPQ15013 274 aaPredicted RBP8.08□□□□□ -1.12
VPS35-211ENST00000569950 OCLNQ16625 522 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms