RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 CACNA1CQ13936 2221 aa26.99■■□□□ 1.91
CTCF-203ENST00000566078 NBEAQ8NFP9 2946 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 SMIM31A0A1B0GVY4 71 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 FIGNL2A6NMB9 653 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 KRT33AO76009 404 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 RIPPLY2Q5TAB7 128 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 GFRALQ6UXV0 394 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 ZNF100Q8IYN0 542 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 GCNT2Q8N0V5 402 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 THEM6Q8WUY1 208 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 SNX33Q8WV41 574 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 ZNF837Q96EG3 531 aaPredicted RBP26.98■■□□□ 1.91
CTCF-203ENST00000566078 MRPL48Q96GC5 212 aaKnown RBP26.98■■□□□ 1.91
CTCF-203ENST00000566078 C12orf49Q9H741 205 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 GPR35Q9HC97 309 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 POLE4Q9NR33 117 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 CD8B2A6NJW9 211 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 OR6C65A6NJZ3 312 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 ERVH48-1M5A8F1 160 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 PHYHO14832 338 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 ALOX5APP20292 161 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 CDONQ4KMG0 1287 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 TP53I3Q53FA7 332 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 FOXB2Q5VYV0 432 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 FOXL2NBQ6ZUU3 175 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 LINC00346Q8IVM7 164 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 SLC7A10Q9NS82 523 aa26.98■■□□□ 1.91
CTCF-203ENST00000566078 PRR32B1ATL7 298 aa26.97■■□□□ 1.91
CTCF-203ENST00000566078 J3QLW9 94 aa26.97■■□□□ 1.91
CTCF-203ENST00000566078 MAGEB4O15481 346 aaPredicted RBP26.97■■□□□ 1.91
CTCF-203ENST00000566078 MT-ND5P03915 603 aa26.97■■□□□ 1.91
CTCF-203ENST00000566078 ZNF19P17023 458 aa26.97■■□□□ 1.91
CTCF-203ENST00000566078 PTGER4P35408 488 aa26.97■■□□□ 1.91
CTCF-203ENST00000566078 LIPAP38571 399 aa26.97■■□□□ 1.91
CTCF-203ENST00000566078 GUCA1AP43080 201 aaPredicted RBP26.97■■□□□ 1.91
CTCF-203ENST00000566078 OR12D2P58182 307 aa26.97■■□□□ 1.91
CTCF-203ENST00000566078 MLLT11Q13015 90 aaPredicted RBP26.97■■□□□ 1.91
CTCF-203ENST00000566078 EIF2B1Q14232 305 aaKnown RBP26.97■■□□□ 1.91
CTCF-203ENST00000566078 TSTQ16762 297 aaKnown RBP26.97■■□□□ 1.91
CTCF-203ENST00000566078 TEX30Q5JUR7 227 aa26.97■■□□□ 1.91
CTCF-203ENST00000566078 C1orf185Q5T7R7 199 aa26.97■■□□□ 1.91
CTCF-203ENST00000566078 SLC18B1Q6NT16 456 aa26.97■■□□□ 1.91
CTCF-203ENST00000566078 KLBQ86Z14 1044 aa26.97■■□□□ 1.91
CTCF-203ENST00000566078 CPT1CQ8TCG5 803 aa26.97■■□□□ 1.91
CTCF-203ENST00000566078 CDADC1Q9BWV3 514 aa26.97■■□□□ 1.91
CTCF-203ENST00000566078 NDUFA13Q9P0J0 144 aa26.97■■□□□ 1.91
CTCF-203ENST00000566078 POLR1DQ9Y2S0 133 aa26.97■■□□□ 1.91
CTCF-203ENST00000566078 TPRP12270 2363 aaKnown RBP26.97■■□□□ 1.91
CTCF-203ENST00000566078 H3BSA7 217 aa26.96■■□□□ 1.91
CTCF-203ENST00000566078 ROR2Q01974 943 aaKnown RBP26.96■■□□□ 1.91
CTCF-203ENST00000566078 KCNMB1Q16558 191 aa26.96■■□□□ 1.91
CTCF-203ENST00000566078 SGCAQ16586 387 aa26.96■■□□□ 1.91
CTCF-203ENST00000566078 PCK2Q16822 640 aa26.96■■□□□ 1.91
CTCF-203ENST00000566078 CEACAM16Q2WEN9 425 aa26.96■■□□□ 1.91
CTCF-203ENST00000566078 GPR107Q5VW38 600 aa26.96■■□□□ 1.91
CTCF-203ENST00000566078 RTL6Q6ICC9 239 aa26.96■■□□□ 1.91
CTCF-203ENST00000566078 OR2A2Q6IF42 318 aa26.96■■□□□ 1.91
CTCF-203ENST00000566078 CLVS1Q8IUQ0 354 aaPredicted RBP26.96■■□□□ 1.91
CTCF-203ENST00000566078 ZNF454Q8N9F8 522 aa26.96■■□□□ 1.91
CTCF-203ENST00000566078 MYCBPQ99417 103 aaPredicted RBP26.96■■□□□ 1.91
CTCF-203ENST00000566078 TM9SF2Q99805 663 aa26.96■■□□□ 1.91
CTCF-203ENST00000566078 RBM38Q9H0Z9 239 aaKnown RBP26.96■■□□□ 1.91
CTCF-203ENST00000566078 NELFAQ9H3P2 528 aa26.96■■□□□ 1.91
CTCF-203ENST00000566078 GNG8Q9UK08 70 aa26.96■■□□□ 1.91
CTCF-203ENST00000566078 ATRXP46100 2492 aa26.96■■□□□ 1.91
CTCF-203ENST00000566078 CCDC160A6NGH7 325 aa26.95■■□□□ 1.91
CTCF-203ENST00000566078 LALBAP00709 142 aa26.95■■□□□ 1.91
CTCF-203ENST00000566078 MSR1P21757 451 aa26.95■■□□□ 1.91
CTCF-203ENST00000566078 SIRPAP78324 504 aa26.95■■□□□ 1.91
CTCF-203ENST00000566078 SYS1Q8N2H4 156 aa26.95■■□□□ 1.91
CTCF-203ENST00000566078 NABP1Q96AH0 204 aa26.95■■□□□ 1.91
CTCF-203ENST00000566078 YIPF6Q96EC8 236 aa26.95■■□□□ 1.91
CTCF-203ENST00000566078 AMELYQ99218 206 aa26.95■■□□□ 1.91
CTCF-203ENST00000566078 FAM192AQ9GZU8 254 aa26.95■■□□□ 1.91
CTCF-203ENST00000566078 EMC9Q9Y3B6 208 aa26.95■■□□□ 1.91
CTCF-203ENST00000566078 FAM215AQ9Y5M1 114 aa26.95■■□□□ 1.91
CTCF-203ENST00000566078 CEPT1Q9Y6K0 416 aa26.95■■□□□ 1.91
CTCF-203ENST00000566078 INTS1Q8N201 2190 aaKnown RBP26.95■■□□□ 1.9
CTCF-203ENST00000566078 TTLL8A6PVC2 850 aa26.94■■□□□ 1.9
CTCF-203ENST00000566078 PSMD9O00233 223 aa26.94■■□□□ 1.9
CTCF-203ENST00000566078 TMCC2O75069 709 aa26.94■■□□□ 1.9
CTCF-203ENST00000566078 TGFBR2P37173 567 aa26.94■■□□□ 1.9
CTCF-203ENST00000566078 GUSBP1Q15486 140 aa26.94■■□□□ 1.9
CTCF-203ENST00000566078 TTYH2Q9BSA4 534 aa26.94■■□□□ 1.9
CTCF-203ENST00000566078 ISYNA1Q9NPH2 558 aa26.94■■□□□ 1.9
CTCF-203ENST00000566078 UPB1Q9UBR1 384 aa26.94■■□□□ 1.9
CTCF-203ENST00000566078 MBD3L4A6NDZ8 208 aaPredicted RBP26.94■■□□□ 1.9
CTCF-203ENST00000566078 MBD3L3A6NE82 208 aaPredicted RBP26.94■■□□□ 1.9
CTCF-203ENST00000566078 MBD3L5A6NJ08 208 aaPredicted RBP26.94■■□□□ 1.9
CTCF-203ENST00000566078 ZNF587BE7ETH6 402 aa26.94■■□□□ 1.9
CTCF-203ENST00000566078 CORO6Q6QEF8 472 aa26.94■■□□□ 1.9
CTCF-203ENST00000566078 FAM214BQ7L5A3 538 aa26.94■■□□□ 1.9
CTCF-203ENST00000566078 VASH1Q7L8A9 365 aaPredicted RBP26.94■■□□□ 1.9
CTCF-203ENST00000566078 DCXRQ7Z4W1 244 aa26.94■■□□□ 1.9
CTCF-203ENST00000566078 UBE2J2Q8N2K1 259 aa26.94■■□□□ 1.9
CTCF-203ENST00000566078 MBD3L2Q8NHZ7 208 aaPredicted RBP26.94■■□□□ 1.9
CTCF-203ENST00000566078 ASB17Q8WXJ9 295 aa26.94■■□□□ 1.9
CTCF-203ENST00000566078 BABAM2Q9NXR7 383 aa26.94■■□□□ 1.9
CTCF-203ENST00000566078 CYB5R1Q9UHQ9 305 aa26.94■■□□□ 1.9
CTCF-203ENST00000566078 IKZF2Q9UKS7 526 aa26.94■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms