RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 LEG1Q6P5S2 330 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 SHQ1Q6PI26 577 aaKnown RBP7.97□□□□□ -1.13
VPS35-206ENST00000565228 ZNF611Q8N823 705 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 FAM169BQ8N8A8 192 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 OR52E2Q8NGJ4 325 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 C11orf40Q8WZ69 217 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 SLC7A6Q92536 515 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 USB1Q9BQ65 265 aaKnown RBP7.97□□□□□ -1.13
VPS35-206ENST00000565228 IFT27Q9BW83 186 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 ZNF416Q9BWM5 594 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 NMNAT2Q9BZQ4 307 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 CXXC4Q9H2H0 198 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 ESRP2Q9H6T0 727 aaKnown RBP7.97□□□□□ -1.13
VPS35-206ENST00000565228 MED20Q9H944 212 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 OBP2BQ9NPH6 170 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 CISD1Q9NZ45 108 aaKnown RBP7.97□□□□□ -1.13
VPS35-206ENST00000565228 GRHPRQ9UBQ7 328 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 MGAT4BQ9UQ53 548 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 AP4S1Q9Y587 144 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 A0A1W2PPL8 197 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 C5orf63A6NC05 138 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 A6NIZ1 184 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 FAM183AA6NL82 134 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 E9PQ18 207 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 RAF1P04049 648 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 GYPBP06028 91 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 OR8G3PP0DMU2 310 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 SLC6A6P31641 620 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 PYCR1P32322 319 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 RBMXP38159 391 aaKnown RBP7.96□□□□□ -1.14
VPS35-206ENST00000565228 WNT5AP41221 380 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 CAPZA2P47755 286 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 UBE2NP61088 152 aaKnown RBP7.96□□□□□ -1.14
VPS35-206ENST00000565228 RAP1BP61224 184 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 RAP1AP62834 184 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 HNRNPA0Q13151 305 aaKnown RBP7.96□□□□□ -1.14
VPS35-206ENST00000565228 CRMP1Q14194 572 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 ADIPOQQ15848 244 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 GSG1Q2KHT4 349 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 DEFB113Q30KQ7 82 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 C3orf36Q3SXR2 165 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 CCDC92Q53HC0 331 aaPredicted RBP7.96□□□□□ -1.14
VPS35-206ENST00000565228 PABPC1L2AQ5JQF8 200 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 LINC01590Q5TEZ4 76 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 FBXW10Q5XX13 1052 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 TMEM108Q6UXF1 575 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 DTX2Q86UW9 622 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 ZBTB46Q86UZ6 589 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 LRP11Q86VZ4 500 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 LNX2Q8N448 690 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 OR51L1Q8NGJ5 315 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 OR10S1Q8NGN2 331 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 OR9Q1Q8NGQ5 310 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 SMAP2Q8WU79 429 aaPredicted RBP7.96□□□□□ -1.14
VPS35-206ENST00000565228 PTP4A1Q93096 173 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 TRAF4Q9BUZ4 470 aaPredicted RBP7.96□□□□□ -1.14
VPS35-206ENST00000565228 RBM4Q9BWF3 364 aaKnown RBP7.96□□□□□ -1.14
VPS35-206ENST00000565228 POFUT1Q9H488 388 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 SIAEQ9HAT2 523 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 SRA1Q9HD15 236 aaKnown RBP7.96□□□□□ -1.14
VPS35-206ENST00000565228 B3GAT2Q9NPZ5 323 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 RPRD1BQ9NQG5 326 aaKnown RBP7.96□□□□□ -1.14
VPS35-206ENST00000565228 MYEF2Q9P2K5 600 aaKnown RBP7.96□□□□□ -1.14
VPS35-206ENST00000565228 GDF2Q9UK05 429 aaPredicted RBP7.96□□□□□ -1.14
VPS35-206ENST00000565228 LAMP3Q9UQV4 416 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 LHFPL6Q9Y693 200 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 ATP23Q9Y6H3 246 aa7.96□□□□□ -1.14
VPS35-206ENST00000565228 TVP23AA6NH52 213 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 SERPINA5P05154 406 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 APEX1P27695 318 aaKnown RBP7.95□□□□□ -1.14
VPS35-206ENST00000565228 THBS4P35443 961 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 GGT2P36268 569 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 ARR3P36575 388 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 RPS6KA3P51812 740 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 HIST1H3AP68431 136 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 EFNB1P98172 346 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 CDK5Q00535 292 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 GINS1Q14691 196 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 KCNMB1Q16558 191 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 SWI5Q1ZZU3 235 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 HIST2H3PS2Q5TEC6 136 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 FAM205BPQ63HN1 556 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 KDM4DQ6B0I6 523 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 KRT80Q6KB66 452 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 ZNF774Q6NX45 483 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 CORO6Q6QEF8 472 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 SLC22A25Q6T423 547 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 HIST2H3AQ71DI3 136 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 SLC16A14Q7RTX9 510 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 BCDIN3DQ7Z5W3 292 aaKnown RBP7.95□□□□□ -1.14
VPS35-206ENST00000565228 YTHDF3Q7Z739 585 aaKnown RBP7.95□□□□□ -1.14
VPS35-206ENST00000565228 ZNF101Q8IZC7 436 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 LINC00471Q8N535 108 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 WFDC11Q8NEX6 87 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 BBS1Q8NFJ9 593 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 SLC26A10Q8NG04 563 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 OR5K1Q8NHB7 308 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 TMEM171Q8WVE6 324 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 MBD6Q96DN6 1003 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 RADILQ96JH8 1075 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms