RNA–Protein interactions for RNA: ENST00000564703.1

RAB40C-208, Transcript of RAB40C, member RAS oncogene family, human

TSL 3

Gene RAB40C, Length 921 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB40C-208	ENST00000564703	RAB39A	Q14964	217 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	PGGHG	Q32M88	737 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	ZNF672	Q499Z4	452 aa	Predicted RBP	13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	C20orf204	Q6ZNR8	217 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	OR6V1	Q8N148	313 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	CYB561A3	Q8NBI2	242 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	NPEPL1	Q8NDH3	523 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	KBTBD8	Q8NFY9	601 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	OR10H5	Q8NGA6	315 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	OR4F15	Q8NGB8	312 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	OR4Q3	Q8NH05	313 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	NRGN	Q92686	78 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	NABP1	Q96AH0	204 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	OTULIN	Q96BN8	352 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	TSSK2	Q96PF2	358 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	CDADC1	Q9BWV3	514 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	LIME1	Q9H400	295 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	C1orf198	Q9H425	327 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	POLE4	Q9NR33	117 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	FAIM	Q9NVQ4	179 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	POLR1D	Q9Y2S0	133 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	ORC6	Q9Y5N6	252 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	ROS1	P08922	2347 aa		13.9	□□□□□ -0.18
RAB40C-208	ENST00000564703	NOTCH2	Q04721	2471 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703		A0A1W2PPR1	153 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	ZNF503-AS2	A6NEH8	195 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	ERICH4	A6NGS2	130 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	SHISA9	B4DS77	424 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	CDH11	P55287	796 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	LSM6	P62312	80 aa	Known RBP	13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	CDK5	Q00535	292 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	FOXL2NB	Q6ZUU3	175 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	SYT9	Q86SS6	491 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	CDH24	Q86UP0	819 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	PARP8	Q8N3A8	854 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	ZNF611	Q8N823	705 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	SLC37A3	Q8NCC5	494 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	PROKR2	Q8NFJ6	384 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	FGFBP3	Q8TAT2	258 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	FOXN4	Q96NZ1	517 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	RBM4B	Q9BQ04	359 aa	Known RBP	13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	RBM4	Q9BWF3	364 aa	Known RBP	13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	PRRG3	Q9BZD7	231 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	CMC2	Q9NRP2	79 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	ZNF224	Q9NZL3	707 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	ST6GALNAC2	Q9UJ37	374 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	ABCA12	Q86UK0	2595 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	SPG11	Q96JI7	2443 aa		13.89	□□□□□ -0.19
RAB40C-208	ENST00000564703	FAM171A2	A8MVW0	826 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	ANKRD65	E5RJM6	399 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	ATP6V1G2-DDX39B	F2Z307	99 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	CELA3B	P08861	270 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	ZNF823	P16415	610 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	ZNF14	P17017	642 aa	Predicted RBP	13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	ZNF32	P17041	273 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	IGFBP5	P24593	272 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	APLNR	P35414	380 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	GALK2	Q01415	458 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	PTGES3	Q15185	160 aa	Known RBP	13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	PABPC1L2A	Q5JQF8	200 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	ZNF362	Q5T0B9	420 aa	Predicted RBP	13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	KDM4D	Q6B0I6	523 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	ACSM5	Q6NUN0	579 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	ZBTB46	Q86UZ6	589 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	IQCF1	Q8N6M8	205 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	LILRB1	Q8NHL6	650 aa	Predicted RBP	13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	SMAP2	Q8WU79	429 aa	Predicted RBP	13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	PIGT	Q969N2	578 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	FBXO17	Q96EF6	278 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	ZNF416	Q9BWM5	594 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	RACGAP1	Q9H0H5	632 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	GABARAPL1	Q9H0R8	117 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	FN3K	Q9H479	309 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	CDH20	Q9HBT6	801 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	EMC7	Q9NPA0	242 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	AKAP6	Q13023	2319 aa		13.88	□□□□□ -0.19
RAB40C-208	ENST00000564703	ITPR2	Q14571	2701 aa		13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	PRR23D1	E9PI22	279 aa	Predicted RBP	13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	DCTN6	O00399	190 aa		13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	TMCC2	O75069	709 aa		13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	MPZL1	O95297	269 aa		13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	MMP7	P09237	267 aa	Predicted RBP	13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	PRR23D2	P0DMB1	279 aa	Predicted RBP	13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	FMO3	P31513	532 aa		13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	FABP6	P51161	128 aa		13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	BLVRA	P53004	296 aa		13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	TEK	Q02763	1124 aa		13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	SPOCK1	Q08629	439 aa		13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	SCRN3	Q0VDG4	424 aa		13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	CRMP1	Q14194	572 aa		13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	SNAPC1	Q16533	368 aa		13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	KCNMB1	Q16558	191 aa		13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	TBC1D28	Q2M2D7	210 aa		13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	TMEM236	Q5W0B7	351 aa		13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	PAMR1	Q6UXH9	720 aa		13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	FBXL14	Q8N1E6	418 aa		13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	PQLC1	Q8N2U9	271 aa		13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	SLC30A7	Q8NEW0	376 aa		13.87	□□□□□ -0.19
RAB40C-208	ENST00000564703	OR2AJ1	Q8NGZ0	328 aa		13.87	□□□□□ -0.19

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