RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 C16orf97H3BN30 126 aa18.09■□□□□ 0.49
CLN3-212ENST00000564574 WBP4O75554 376 aaKnown RBP18.09■□□□□ 0.49
CLN3-212ENST00000564574 RAD51DO75771 328 aa18.09■□□□□ 0.49
CLN3-212ENST00000564574 B4GALT1P15291 398 aa18.09■□□□□ 0.49
CLN3-212ENST00000564574 GSTT1P30711 240 aa18.09■□□□□ 0.49
CLN3-212ENST00000564574 HOXC12P31275 282 aa18.09■□□□□ 0.49
CLN3-212ENST00000564574 CDAP32320 146 aa18.09■□□□□ 0.49
CLN3-212ENST00000564574 FAM27E3Q08E93 113 aa18.09■□□□□ 0.49
CLN3-212ENST00000564574 GGTLC2Q14390 218 aa18.09■□□□□ 0.49
CLN3-212ENST00000564574 CDSNQ15517 529 aa18.09■□□□□ 0.49
CLN3-212ENST00000564574 SGCAQ16586 387 aa18.09■□□□□ 0.49
CLN3-212ENST00000564574 DPPA2Q7Z7J5 298 aa18.09■□□□□ 0.49
CLN3-212ENST00000564574 P2RY8Q86VZ1 359 aa18.09■□□□□ 0.49
CLN3-212ENST00000564574 OR10H5Q8NGA6 315 aa18.09■□□□□ 0.49
CLN3-212ENST00000564574 CNIH3Q8TBE1 160 aa18.09■□□□□ 0.49
CLN3-212ENST00000564574 CNBD2Q96M20 576 aa18.09■□□□□ 0.49
CLN3-212ENST00000564574 KCNN2Q9H2S1 579 aa18.09■□□□□ 0.49
CLN3-212ENST00000564574 AASSQ9UDR5 926 aa18.09■□□□□ 0.49
CLN3-212ENST00000564574 LRRC42Q9Y546 428 aa18.09■□□□□ 0.49
CLN3-212ENST00000564574 CLEC18AA5D8T8 446 aa18.08■□□□□ 0.48
CLN3-212ENST00000564574 TFP02787 698 aa18.08■□□□□ 0.48
CLN3-212ENST00000564574 CST2P09228 141 aa18.08■□□□□ 0.48
CLN3-212ENST00000564574 ZNF823P16415 610 aa18.08■□□□□ 0.48
CLN3-212ENST00000564574 PAX7P23759 505 aa18.08■□□□□ 0.48
CLN3-212ENST00000564574 UGT2B10P36537 528 aa18.08■□□□□ 0.48
CLN3-212ENST00000564574 SORDQ00796 357 aa18.08■□□□□ 0.48
CLN3-212ENST00000564574 POU4F2Q12837 409 aa18.08■□□□□ 0.48
CLN3-212ENST00000564574 MED21Q13503 144 aa18.08■□□□□ 0.48
CLN3-212ENST00000564574 TBRG1Q3YBR2 411 aa18.08■□□□□ 0.48
CLN3-212ENST00000564574 KRT80Q6KB66 452 aa18.08■□□□□ 0.48
CLN3-212ENST00000564574 KLHL24Q6TFL4 600 aa18.08■□□□□ 0.48
CLN3-212ENST00000564574 CLEC18BQ6UXF7 455 aa18.08■□□□□ 0.48
CLN3-212ENST00000564574 SSX8Q7RTT4 187 aa18.08■□□□□ 0.48
CLN3-212ENST00000564574 CLEC18CQ8NCF0 446 aa18.08■□□□□ 0.48
CLN3-212ENST00000564574 NANOS1Q8WY41 292 aaKnown RBP18.08■□□□□ 0.48
CLN3-212ENST00000564574 C11orf40Q8WZ69 217 aa18.08■□□□□ 0.48
CLN3-212ENST00000564574 ZMYND19Q96E35 227 aaPredicted RBP18.08■□□□□ 0.48
CLN3-212ENST00000564574 FOXN4Q96NZ1 517 aa18.08■□□□□ 0.48
CLN3-212ENST00000564574 OBP2BQ9NPH6 170 aa18.08■□□□□ 0.48
CLN3-212ENST00000564574 MRPL22Q9NWU5 206 aaKnown RBP18.08■□□□□ 0.48
CLN3-212ENST00000564574 RPL36Q9Y3U8 105 aaKnown RBP18.08■□□□□ 0.48
CLN3-212ENST00000564574 ARPC4-TTLL3A0A0A6YYG9 625 aa18.07■□□□□ 0.48
CLN3-212ENST00000564574 SEC14L2O76054 403 aa18.07■□□□□ 0.48
CLN3-212ENST00000564574 GPANK1O95872 356 aa18.07■□□□□ 0.48
CLN3-212ENST00000564574 PPP3CBP16298 524 aa18.07■□□□□ 0.48
CLN3-212ENST00000564574 ENTPD1P49961 510 aa18.07■□□□□ 0.48
CLN3-212ENST00000564574 CXCR4P61073 352 aa18.07■□□□□ 0.48
CLN3-212ENST00000564574 CSNK2BP67870 215 aa18.07■□□□□ 0.48
CLN3-212ENST00000564574 TFF3Q07654 80 aa18.07■□□□□ 0.48
CLN3-212ENST00000564574 DBPQ10586 325 aaPredicted RBP18.07■□□□□ 0.48
CLN3-212ENST00000564574 TEX30Q5JUR7 227 aa18.07■□□□□ 0.48
CLN3-212ENST00000564574 TIMM23BQ5SRD1 257 aa18.07■□□□□ 0.48
CLN3-212ENST00000564574 SLC16A14Q7RTX9 510 aa18.07■□□□□ 0.48
CLN3-212ENST00000564574 SYT9Q86SS6 491 aa18.07■□□□□ 0.48
CLN3-212ENST00000564574 ZNF511Q8NB15 262 aa18.07■□□□□ 0.48
CLN3-212ENST00000564574 SSC4DQ8WTU2 575 aa18.07■□□□□ 0.48
CLN3-212ENST00000564574 INTS14Q96SY0 518 aa18.07■□□□□ 0.48
CLN3-212ENST00000564574 SLC17A5Q9NRA2 495 aa18.07■□□□□ 0.48
CLN3-212ENST00000564574 AMDHD2Q9Y303 409 aa18.07■□□□□ 0.48
CLN3-212ENST00000564574 COMMD3-BMI1R4GMX3 469 aa18.07■□□□□ 0.48
CLN3-212ENST00000564574 A0A096LPE4 126 aa18.06■□□□□ 0.48
CLN3-212ENST00000564574 A0A1W2PPZ6 126 aa18.06■□□□□ 0.48
CLN3-212ENST00000564574 TVP23AA6NH52 213 aa18.06■□□□□ 0.48
CLN3-212ENST00000564574 OR5H1A6NKK0 313 aa18.06■□□□□ 0.48
CLN3-212ENST00000564574 C12orf71A8MTZ7 269 aa18.06■□□□□ 0.48
CLN3-212ENST00000564574 TMCC2O75069 709 aa18.06■□□□□ 0.48
CLN3-212ENST00000564574 MPZL1O95297 269 aa18.06■□□□□ 0.48
CLN3-212ENST00000564574 SCG5P05408 212 aa18.06■□□□□ 0.48
CLN3-212ENST00000564574 PEX19P40855 299 aa18.06■□□□□ 0.48
CLN3-212ENST00000564574 MTNR1AP48039 350 aa18.06■□□□□ 0.48
CLN3-212ENST00000564574 UBE2NP61088 152 aaKnown RBP18.06■□□□□ 0.48
CLN3-212ENST00000564574 PCBD1P61457 104 aa18.06■□□□□ 0.48
CLN3-212ENST00000564574 ADAM8P78325 824 aa18.06■□□□□ 0.48
CLN3-212ENST00000564574 SRSF1Q07955 248 aaKnown RBP eCLIP18.06■□□□□ 0.48
CLN3-212ENST00000564574 TSC22D1Q15714 1073 aa18.06■□□□□ 0.48
CLN3-212ENST00000564574 SLC36A2Q495M3 483 aa18.06■□□□□ 0.48
CLN3-212ENST00000564574 TIGD4Q8IY51 512 aa18.06■□□□□ 0.48
CLN3-212ENST00000564574 CNN2Q99439 309 aaKnown RBP18.06■□□□□ 0.48
CLN3-212ENST00000564574 ZNF416Q9BWM5 594 aa18.06■□□□□ 0.48
CLN3-212ENST00000564574 ACTR6Q9GZN1 396 aa18.06■□□□□ 0.48
CLN3-212ENST00000564574 EMC7Q9NPA0 242 aa18.06■□□□□ 0.48
CLN3-212ENST00000564574 PLCXD1Q9NUJ7 323 aa18.06■□□□□ 0.48
CLN3-212ENST00000564574 MYO18BQ8IUG5 2567 aa18.06■□□□□ 0.48
CLN3-212ENST00000564574 UBL3O95164 117 aa18.05■□□□□ 0.48
CLN3-212ENST00000564574 WNT11O96014 354 aa18.05■□□□□ 0.48
CLN3-212ENST00000564574 DBTP11182 482 aaKnown RBP18.05■□□□□ 0.48
CLN3-212ENST00000564574 CCKARP32238 428 aa18.05■□□□□ 0.48
CLN3-212ENST00000564574 ZNF91Q05481 1191 aa18.05■□□□□ 0.48
CLN3-212ENST00000564574 AQP6Q13520 282 aa18.05■□□□□ 0.48
CLN3-212ENST00000564574 ENDOGQ14249 297 aaKnown RBP18.05■□□□□ 0.48
CLN3-212ENST00000564574 MEP1BQ16820 701 aa18.05■□□□□ 0.48
CLN3-212ENST00000564574 PCK2Q16822 640 aa18.05■□□□□ 0.48
CLN3-212ENST00000564574 HIKESHIQ53FT3 197 aa18.05■□□□□ 0.48
CLN3-212ENST00000564574 C6orf141Q5SZD1 244 aa18.05■□□□□ 0.48
CLN3-212ENST00000564574 LYPD4Q6UWN0 246 aa18.05■□□□□ 0.48
CLN3-212ENST00000564574 SHFQ7M4L6 423 aa18.05■□□□□ 0.48
CLN3-212ENST00000564574 SLC16A9Q7RTY1 509 aa18.05■□□□□ 0.48
CLN3-212ENST00000564574 ERI1Q8IV48 349 aaKnown RBP18.05■□□□□ 0.48
CLN3-212ENST00000564574 SKA3Q8IX90 412 aa18.05■□□□□ 0.48
CLN3-212ENST00000564574 LRRC18Q8N456 261 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms