RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 UGT2A1Q9Y4X1 527 aa11.58□□□□□ -0.56
CLK3-216ENST00000564468 IER3IP1Q9Y5U9 82 aa11.58□□□□□ -0.56
CLK3-216ENST00000564468 LYVE1Q9Y5Y7 322 aa11.58□□□□□ -0.56
CLK3-216ENST00000564468 CR1P17927 2039 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 IGKV1D-43A0A0B4J1Z2 117 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 TEX13CA0A0J9YWL9 993 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 A0A1W2PPL8 197 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 TRIM64A6NGJ6 449 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 TRIM64BA6NI03 449 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 AQP12BA6NM10 295 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 C12orf71A8MTZ7 269 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 IDH3BO43837 385 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 SNAP29O95721 258 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 TXNDC12O95881 172 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 MMP7P09237 267 aaPredicted RBP11.57□□□□□ -0.56
CLK3-216ENST00000564468 RAP2AP10114 183 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 ZNF26P17031 533 aaPredicted RBP11.57□□□□□ -0.56
CLK3-216ENST00000564468 MSR1P21757 451 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 CRABP1P29762 137 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 RAD52P43351 418 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 GSSP48637 474 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 PPOXP50336 477 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 SELENOVP59797 346 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 TNK1Q13470 666 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 RFX4Q33E94 735 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 MESTQ5EB52 335 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 OR2T5Q6IEZ7 315 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 DNM1P34Q6PK57 102 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 FOXL2NBQ6ZUU3 175 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 ZNF584Q8IVC4 421 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 AQP12AQ8IXF9 295 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 OR2T29Q8NH02 315 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 FANK1Q8TC84 345 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 VRK1Q99986 396 aaPredicted RBP11.57□□□□□ -0.56
CLK3-216ENST00000564468 BTBD10Q9BSF8 475 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 REPIN1Q9BWE0 567 aaKnown RBP11.57□□□□□ -0.56
CLK3-216ENST00000564468 RAB1BQ9H0U4 201 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 OR52D1Q9H346 318 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 REEP1Q9H902 201 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 TIMM10BQ9Y5J6 103 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 COL6A5A8TX70 2615 aa11.57□□□□□ -0.56
CLK3-216ENST00000564468 YLPM1P49750 1951 aaKnown RBP11.57□□□□□ -0.56
CLK3-216ENST00000564468 SOCS2O14508 198 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 ARPC3O15145 178 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 NDUFS7O75251 213 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 KHDRBS3O75525 346 aaKnown RBP11.56□□□□□ -0.56
CLK3-216ENST00000564468 DNAJC8O75937 253 aaPredicted RBP11.56□□□□□ -0.56
CLK3-216ENST00000564468 ATP5HO75947 161 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 CCNB2O95067 398 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 F12P00748 615 aaPredicted RBP11.56□□□□□ -0.56
CLK3-216ENST00000564468 HEXAP06865 529 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 ZNF32P17041 273 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 LAP3P28838 519 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 PCSK6P29122 969 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 NOS3P29474 1203 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 PABPC1L2AQ5JQF8 200 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 PGBD2Q6P3X8 592 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 PGM2L1Q6PCE3 622 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 THSD4Q6ZMP0 1018 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 JAZF1Q86VZ6 243 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 C1orf174Q8IYL3 243 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 CLDN22Q8N7P3 220 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 OR52L1Q8NGH7 329 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 SPATA3Q8NHX4 192 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 HTRA1Q92743 480 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 MRPL24Q96A35 216 aaKnown RBP11.56□□□□□ -0.56
CLK3-216ENST00000564468 RASD2Q96D21 266 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 CLPTM1LQ96KA5 538 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 ERMAPQ96PL5 475 aaPredicted RBP11.56□□□□□ -0.56
CLK3-216ENST00000564468 GPA33Q99795 319 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 IFT27Q9BW83 186 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 BCL2L14Q9BZR8 327 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 YY1AP1Q9H869 796 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 DYNLRB1Q9NP97 96 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 MYOZ1Q9NP98 299 aaPredicted RBP11.56□□□□□ -0.56
CLK3-216ENST00000564468 POLE4Q9NR33 117 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 VSX1Q9NZR4 365 aaPredicted RBP11.56□□□□□ -0.56
CLK3-216ENST00000564468 EIF3KQ9UBQ5 218 aaKnown RBP11.56□□□□□ -0.56
CLK3-216ENST00000564468 IL20RAQ9UHF4 553 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 GPR160Q9UJ42 338 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 ABCA1O95477 2261 aa11.56□□□□□ -0.56
CLK3-216ENST00000564468 H7C1C5 153 aa11.55□□□□□ -0.56
CLK3-216ENST00000564468 ACOT8O14734 319 aa11.55□□□□□ -0.56
CLK3-216ENST00000564468 SMAD7O15105 426 aaKnown RBP11.55□□□□□ -0.56
CLK3-216ENST00000564468 SLC16A7O60669 478 aa11.55□□□□□ -0.56
CLK3-216ENST00000564468 PPP1R3DO95685 299 aa11.55□□□□□ -0.56
CLK3-216ENST00000564468 RENP00797 406 aa11.55□□□□□ -0.56
CLK3-216ENST00000564468 STOMP27105 288 aa11.55□□□□□ -0.56
CLK3-216ENST00000564468 GDI2P50395 445 aaKnown RBP11.55□□□□□ -0.56
CLK3-216ENST00000564468 FXYD6P3P58550 94 aa11.55□□□□□ -0.56
CLK3-216ENST00000564468 LCN6P62502 163 aa11.55□□□□□ -0.56
CLK3-216ENST00000564468 RGS7BPQ6MZT1 257 aaPredicted RBP11.55□□□□□ -0.56
CLK3-216ENST00000564468 DNM1P46Q6ZS02 220 aa11.55□□□□□ -0.56
CLK3-216ENST00000564468 NEU4Q8WWR8 484 aaPredicted RBP11.55□□□□□ -0.56
CLK3-216ENST00000564468 FAM168AQ92567 244 aa11.55□□□□□ -0.56
CLK3-216ENST00000564468 SLC7A6OSQ96CW6 309 aaPredicted RBP11.55□□□□□ -0.56
CLK3-216ENST00000564468 SAMD8Q96LT4 415 aa11.55□□□□□ -0.56
CLK3-216ENST00000564468 SNX18Q96RF0 628 aa11.55□□□□□ -0.56
CLK3-216ENST00000564468 DOK1Q99704 481 aa11.55□□□□□ -0.56
CLK3-216ENST00000564468 SMR3AQ99954 134 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms