RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 OR2T7P0C7T2 308 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 SFTPCP11686 197 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 RAB3BP20337 219 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 CAV3P56539 151 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 SNRPNP63162 240 aaKnown RBP8.29□□□□□ -1.08
VPS39-205ENST00000562258 P2RY14Q15391 338 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 ETFDHQ16134 617 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 ZNF691Q5VV52 312 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 KDM4DQ6B0I6 523 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 UNQ6494/PRO21346Q6UXR6 183 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 OR2M3Q8NG83 312 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 OR2T27Q8NH04 317 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 IL1F10Q8WWZ1 152 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 FGGYQ96C11 551 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 GIMAP5Q96F15 307 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 MICU1Q9BPX6 476 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 FUNDC2Q9BWH2 189 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 SLC19A3Q9BZV2 496 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 TGIF2Q9GZN2 237 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 MRPL15Q9P015 296 aaKnown RBP8.29□□□□□ -1.08
VPS39-205ENST00000562258 MOKQ9UQ07 419 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 PEX16Q9Y5Y5 336 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 M0R135 149 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 UMODP07911 640 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 CD3GP09693 182 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 VAMP1P23763 118 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 GRK5P34947 590 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 SLX4IPQ5VYV7 408 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 LYPD4Q6UWN0 246 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 TMEM200AQ86VY9 491 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 PAPD5Q8NDF8 572 aaKnown RBP8.29□□□□□ -1.08
VPS39-205ENST00000562258 DNAAF1Q8NEP3 725 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 ABHD5Q8WTS1 349 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 SGCDQ92629 289 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 SLAMF6Q96DU3 332 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 ZNF799Q96GE5 643 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 WACQ9BTA9 647 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 CMC2Q9NRP2 79 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 EXTL2Q9UBQ6 330 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 LHX6Q9UPM6 363 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 TIMM10BQ9Y5J6 103 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 NLRC5Q86WI3 1866 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 MED13Q9UHV7 2174 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 MEX3AA1L020 520 aaKnown RBP8.29□□□□□ -1.08
VPS39-205ENST00000562258 UBE2QL1A1L167 161 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 SLC22A1O15245 554 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 CDC14BO60729 498 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 GABRA1P14867 456 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 RAB3AP20336 220 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 EMX1Q04741 257 aaPredicted RBP8.29□□□□□ -1.08
VPS39-205ENST00000562258 DCTN2Q13561 401 aaKnown RBP8.29□□□□□ -1.08
VPS39-205ENST00000562258 ST3GAL2Q16842 350 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 THEM4Q5T1C6 240 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 RNF165Q6ZSG1 346 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 COX15Q7KZN9 410 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 OR5M11Q96RB7 305 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 TCRBV5S2A0A599 114 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 MPZL1O95297 269 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 TBX6O95947 436 aaPredicted RBP8.29□□□□□ -1.08
VPS39-205ENST00000562258 CELA3AP09093 270 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 RFPL3SP0C7P2 107 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 SELENOPP49908 381 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 FXYD6P3P58550 94 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 ABCA11PQ4W5N1 156 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 RHOXF1Q8NHV9 184 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 RNF170Q96K19 258 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 ARHGDIGQ99819 225 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 NDRG4Q9ULP0 352 aaKnown RBP8.29□□□□□ -1.08
VPS39-205ENST00000562258 TRAV18A0A075B6X5 111 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 CCDC182A6NF36 153 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 LINC01387J3KSC0 135 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 WRBO00258 174 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 RER1O15258 196 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 BCAS1O75363 584 aaPredicted RBP8.28□□□□□ -1.08
VPS39-205ENST00000562258 GATBO75879 557 aaKnown RBP8.28□□□□□ -1.08
VPS39-205ENST00000562258 RECKO95980 971 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 NUP62P37198 522 aaPredicted RBP8.28□□□□□ -1.08
VPS39-205ENST00000562258 MAP2K3P46734 347 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 PCBP3P57721 371 aaKnown RBP8.28□□□□□ -1.08
VPS39-205ENST00000562258 SEC61A1P61619 476 aaKnown RBP8.28□□□□□ -1.08
VPS39-205ENST00000562258 PRKCDQ05655 676 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 GPR50Q13585 617 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 OR8B8Q15620 311 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 NTRK2Q16620 822 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 OCLNQ16625 522 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 RPL3LQ92901 407 aaKnown RBP8.28□□□□□ -1.08
VPS39-205ENST00000562258 KCNS2Q9ULS6 477 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 SLC22A13Q9Y226 551 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 SIGLEC7Q9Y286 467 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 MEIS3P1A6NDR6 274 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 KLF7O75840 302 aaPredicted RBP8.28□□□□□ -1.08
VPS39-205ENST00000562258 CDK1P06493 297 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 APEX1P27695 318 aaKnown RBP8.28□□□□□ -1.08
VPS39-205ENST00000562258 MRPL14Q6P1L8 145 aaKnown RBP8.28□□□□□ -1.08
VPS39-205ENST00000562258 SPARTQ8N0X7 666 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 OR51T1Q8NGJ9 327 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 OR1J1Q8NGS3 322 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 FLVCR1-AS1Q8TAF5 88 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 OR51E1Q8TCB6 317 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 THRSPQ92748 146 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms