RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 VASH1Q7L8A9 365 aaPredicted RBP9.12□□□□□ -0.95
USP3-219ENST00000561326 FAM220AQ7Z4H9 259 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.12□□□□□ -0.95
USP3-219ENST00000561326 ADGRE4PQ86SQ3 457 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 P2RY8Q86VZ1 359 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 ANKRD13BQ86YJ7 626 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 WDFY1Q8IWB7 410 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 OR5M9Q8NGP3 310 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 SMAP2Q8WU79 429 aaPredicted RBP9.12□□□□□ -0.95
USP3-219ENST00000561326 SPRYD4Q8WW59 207 aaPredicted RBP9.12□□□□□ -0.95
USP3-219ENST00000561326 APH1AQ96BI3 265 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 YIPF6Q96EC8 236 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 C4orf36Q96KX1 117 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 FOXN4Q96NZ1 517 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 TM9SF2Q99805 663 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 ZNF649Q9BS31 505 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 SLC25A18Q9H1K4 315 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 KCNN2Q9H2S1 579 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 NELFAQ9H3P2 528 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 PRORYQ9H606 182 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 MRPL22Q9NWU5 206 aaKnown RBP9.12□□□□□ -0.95
USP3-219ENST00000561326 LUZP4Q9P127 313 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 UPB1Q9UBR1 384 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 GNG8Q9UK08 70 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 ING1Q9UK53 422 aaPredicted RBP9.12□□□□□ -0.95
USP3-219ENST00000561326 EMC9Q9Y3B6 208 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 ZFHX4Q86UP3 3567 aa9.12□□□□□ -0.95
USP3-219ENST00000561326 DSPP15924 2871 aaKnown RBP9.11□□□□□ -0.95
USP3-219ENST00000561326 TPRP12270 2363 aaKnown RBP9.11□□□□□ -0.95
USP3-219ENST00000561326 CD8B2A6NJW9 211 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 FIGNL2A6NMB9 653 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 ZNF254O75437 659 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 MPZL1O95297 269 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 GPANK1O95872 356 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 TGM6O95932 706 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 GAAP10253 952 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 ABOP16442 354 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 CD53P19397 219 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 MSR1P21757 451 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 LIPAP38571 399 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 OR12D2P58182 307 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 SIRPAP78324 504 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 MRPS34P82930 218 aaKnown RBP9.11□□□□□ -0.95
USP3-219ENST00000561326 RBPJQ06330 500 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 EIF2B1Q14232 305 aaKnown RBP9.11□□□□□ -0.95
USP3-219ENST00000561326 TRAM1Q15629 374 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 PCK2Q16822 640 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 NSUN5P2Q63ZY6 315 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 ZNF324BQ6AW86 544 aaPredicted RBP9.11□□□□□ -0.95
USP3-219ENST00000561326 DEGS2Q6QHC5 323 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 LYPD4Q6UWN0 246 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 GDPGP1Q6ZNW5 385 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 KRT77Q7Z794 578 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 KLBQ86Z14 1044 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.11□□□□□ -0.95
USP3-219ENST00000561326 UBE2J2Q8N2K1 259 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 YIPF7Q8N8F6 280 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 ZNF485Q8NCK3 441 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 C11orf40Q8WZ69 217 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 MROQ9BYG7 248 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 C1orf198Q9H425 327 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 ISG20L2Q9H9L3 353 aaKnown RBP9.11□□□□□ -0.95
USP3-219ENST00000561326 CRLF2Q9HC73 371 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 GPR35Q9HC97 309 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 CLCF1Q9UBD9 225 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 IKZF2Q9UKS7 526 aa9.11□□□□□ -0.95
USP3-219ENST00000561326 RP1L1Q8IWN7 2480 aaPredicted RBP9.11□□□□□ -0.95
USP3-219ENST00000561326 ATMQ13315 3056 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 IGKV1D-43A0A0B4J1Z2 117 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 ZNF587BE7ETH6 402 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 RPL36A-HNRNPH2H7BZ11 118 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 PRRG2O14669 202 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 AIREO43918 545 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 UPK3AO75631 287 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 FARS2O95363 451 aaKnown RBP9.1□□□□□ -0.95
USP3-219ENST00000561326 TPOP07202 933 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 CELP19835 753 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 CDAP32320 146 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 NTF4P34130 210 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 PER3P56645 1201 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 PCBD1P61457 104 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 ROR2Q01974 943 aaKnown RBP9.1□□□□□ -0.95
USP3-219ENST00000561326 ROM1Q03395 351 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 MEP1BQ16820 701 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 EIF2S3LQ2VIR3 472 aaKnown RBP9.1□□□□□ -0.95
USP3-219ENST00000561326 TP53I3Q53FA7 332 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 PHYHD1Q5SRE7 291 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 FAM27BQ5VT28 67 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 LIPKQ5VXJ0 399 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 RPL22L1Q6P5R6 122 aaKnown RBP9.1□□□□□ -0.95
USP3-219ENST00000561326 FOXL2NBQ6ZUU3 175 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 RHOUQ7L0Q8 258 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 FAM214BQ7L5A3 538 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 SSX6Q7RTT6 188 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 DCXRQ7Z4W1 244 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 PHC2Q8IXK0 858 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 ZNF679Q8IYX0 411 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 Q8NA96 180 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 GJC3Q8NFK1 279 aa9.1□□□□□ -0.95
USP3-219ENST00000561326 FAM57AQ8TBR7 257 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms