RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 CDKN2AP42771 156 aaKnown RBP10.4□□□□□ -0.74
LDLR-212ENST00000560467 CSNK1A1P48729 337 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 ZNF84P51523 738 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 EFNB1P98172 346 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 GLO1Q04760 184 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 RAB40BQ12829 278 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 MELKQ14680 651 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 AADACL4Q5VUY2 407 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 NIPAL3Q6P499 406 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 AHSA2Q719I0 299 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 ABHD12BQ7Z5M8 362 aaPredicted RBP10.4□□□□□ -0.74
LDLR-212ENST00000560467 ZNF100Q8IYN0 542 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 GPR137CQ8N3F9 429 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 POMGNT2Q8NAT1 580 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 SYT14Q8NB59 555 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 NPEPL1Q8NDH3 523 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 FNDC9Q8TBE3 224 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 RNF128Q8TEB7 428 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 WNT2BQ93097 391 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 RNFT2Q96EX2 444 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 TMEM80Q96HE8 168 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 ZNF845Q96IR2 970 aaPredicted RBP10.4□□□□□ -0.74
LDLR-212ENST00000560467 TXNDC15Q96J42 360 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 Q96MF0 132 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 TEAD3Q99594 435 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 SFXN3Q9BWM7 321 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 ZNF696Q9H7X3 374 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 RNF122Q9H9V4 155 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 HINT3Q9NQE9 182 aaKnown RBP10.4□□□□□ -0.74
LDLR-212ENST00000560467 MED29Q9NX70 200 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 ERGIC3Q9Y282 383 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 EMC9Q9Y3B6 208 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 FKBP7Q9Y680 259 aa10.4□□□□□ -0.74
LDLR-212ENST00000560467 OR6C68A6NDL8 312 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 TRIM64A6NGJ6 449 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 TRIM64BA6NI03 449 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 ZNF724A8MTY0 619 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 M0R129 80 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 SMPD2O60906 423 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 TRMUO75648 421 aaKnown RBP10.39□□□□□ -0.75
LDLR-212ENST00000560467 CLPTM1O96005 669 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 DBTP11182 482 aaKnown RBP10.39□□□□□ -0.75
LDLR-212ENST00000560467 PIPP12273 146 aaPredicted RBP10.39□□□□□ -0.75
LDLR-212ENST00000560467 HLA-DOBP13765 273 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 ZNF823P16415 610 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 SPI1P17947 270 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 DCKP27707 260 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 GSTT1P30711 240 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 P2RY4P51582 365 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 NUDT6P53370 316 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 ST3GAL4Q11206 333 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 CAMK2DQ13557 499 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 SMN1Q16637 294 aaKnown RBP10.39□□□□□ -0.75
LDLR-212ENST00000560467 CARD17Q5XLA6 110 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 ABLIM2Q6H8Q1 611 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 OR10H5Q8NGA6 315 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 OR9Q1Q8NGQ5 310 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 ZNF519Q8TB69 540 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 PTP4A1Q93096 173 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 GMPPAQ96IJ6 420 aaPredicted RBP10.39□□□□□ -0.75
LDLR-212ENST00000560467 CNN2Q99439 309 aaKnown RBP10.39□□□□□ -0.75
LDLR-212ENST00000560467 EMC6Q9BV81 110 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 CDADC1Q9BWV3 514 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 MRPS26Q9BYN8 205 aaKnown RBP10.39□□□□□ -0.75
LDLR-212ENST00000560467 SYT4Q9H2B2 425 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 AMBNQ9NP70 447 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 VSX1Q9NZR4 365 aaPredicted RBP10.39□□□□□ -0.75
LDLR-212ENST00000560467 B3GAT1Q9P2W7 334 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 PSORS1C1Q9UIG5 152 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 TMEM14AQ9Y6G1 99 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 ZANQ9Y493 2812 aa10.39□□□□□ -0.75
LDLR-212ENST00000560467 ARID1AO14497 2285 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 IGKV3D-15A0A087WSY6 115 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 SLC22A23A1A5C7 686 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 FAM171A2A8MVW0 826 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 DEFB108AA8MXU0 73 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 TRAF3IP2O43734 574 aaPredicted RBP10.38□□□□□ -0.75
LDLR-212ENST00000560467 XPNPEP2O43895 674 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 GLCEO94923 617 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 RAB36O95755 333 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 ACTC1P68032 377 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 ACTA1P68133 377 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 TUBA4AP68366 448 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 ZNF91Q05481 1191 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 MESTQ5EB52 335 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 TMEM154Q6P9G4 183 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 ZNF773Q6PK81 442 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 TMPRSS11AQ6ZMR5 421 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 ADGRE4PQ86SQ3 457 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 UBE2J2Q8N2K1 259 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 ABHD3Q8WU67 409 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 APH1BQ8WW43 257 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 TMEM45BQ96B21 275 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 APH1AQ96BI3 265 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 MNTQ99583 582 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 NUAK2Q9H093 628 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 KCNN2Q9H2S1 579 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 MED20Q9H944 212 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 BCO1Q9HAY6 547 aa10.38□□□□□ -0.75
LDLR-212ENST00000560467 INPP5EQ9NRR6 644 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms