RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 TEX19Q8NA77 164 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 OR5M9Q8NGP3 310 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 LILRB4Q8NHJ6 448 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 INTS14Q96SY0 518 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 WDR76Q9H967 626 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 MRPL22Q9NWU5 206 aaKnown RBP9.94□□□□□ -0.82
USP3-218ENST00000560202 FOXD3Q9UJU5 478 aaPredicted RBP9.94□□□□□ -0.82
USP3-218ENST00000560202 NOSIPQ9Y314 301 aaKnown RBP9.94□□□□□ -0.82
USP3-218ENST00000560202 AHRRA9YTQ3 701 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 MRPL33O75394 65 aaKnown RBP9.93□□□□□ -0.82
USP3-218ENST00000560202 GABARAPO95166 117 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 MPZL1O95297 269 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 YES1P07947 543 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 GAAP10253 952 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 FCGR2AP12318 317 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 CD79BP40259 229 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 ZNF133P52736 654 aaPredicted RBP9.93□□□□□ -0.82
USP3-218ENST00000560202 WNT4P56705 351 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 HSF2Q03933 536 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 DOC2BQ14184 412 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 ZNF181Q2M3W8 571 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 CDC20BQ86Y33 519 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 GLB1L2Q8IW92 636 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 SLC26A10Q8NG04 563 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 OR6N2Q8NGY6 317 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 OR52N1Q8NH53 320 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 GATAD2BQ8WXI9 593 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 TRIB1Q96RU8 372 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 MGLLQ99685 303 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 ALG8Q9BVK2 526 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 NAA50Q9GZZ1 169 aaKnown RBP9.93□□□□□ -0.82
USP3-218ENST00000560202 CALHM2Q9HA72 323 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 PARPBPQ9NWS1 579 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 CLCF1Q9UBD9 225 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 CLEC4AQ9UMR7 237 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 COPS3Q9UNS2 423 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 CAB39Q9Y376 341 aaPredicted RBP9.93□□□□□ -0.82
USP3-218ENST00000560202 A3GALT2U3KPV4 340 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 CHD8Q9HCK8 2581 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 ATMQ13315 3056 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 BOD1L1Q8NFC6 3051 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 A0A1W2PPL8 197 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 ZNF670-ZNF695F2Z2N8 137 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 ZNF593O00488 134 aaPredicted RBP9.93□□□□□ -0.82
USP3-218ENST00000560202 UPK3AO75631 287 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 PTTG1O95997 202 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 HRGP04196 525 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 HSMCR30P0CW71 290 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 LAP3P28838 519 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 PPP5CP53041 499 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 ADAM8P78325 824 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 MEP1BQ16820 701 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 ARMCX4Q5H9R4 360 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 C10orf128Q5T292 105 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 OTPQ5XKR4 325 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 ZNF322Q6U7Q0 402 aaPredicted RBP9.93□□□□□ -0.82
USP3-218ENST00000560202 TMPRSS11AQ6ZMR5 421 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 SSX6Q7RTT6 188 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 DPY19L4Q7Z388 723 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 P4HA3Q7Z4N8 544 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.93□□□□□ -0.82
USP3-218ENST00000560202 RFLNBQ8N5W9 214 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 ZNF485Q8NCK3 441 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 SPRYD4Q8WW59 207 aaPredicted RBP9.93□□□□□ -0.82
USP3-218ENST00000560202 MNTQ99583 582 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 ULBP2Q9BZM5 246 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 GP6Q9HCN6 339 aa9.93□□□□□ -0.82
USP3-218ENST00000560202 ZNF407Q9C0G0 2248 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 ANKRD34BA5PLL1 514 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 DHHO43323 396 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 SPARCP09486 303 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 ZNF823P16415 610 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 ALOX5APP20292 161 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 RPS27P42677 84 aaKnown RBP9.92□□□□□ -0.82
USP3-218ENST00000560202 TDGF1P3P51864 188 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 ZNF585AQ6P3V2 769 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.92□□□□□ -0.82
USP3-218ENST00000560202 GPR137CQ8N3F9 429 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 MFSD4AQ8N468 514 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 OR6Q1Q8NGQ2 317 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 OTOSQ8NHW6 89 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 C11orf40Q8WZ69 217 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 SNRNP40Q96DI7 357 aaKnown RBP9.92□□□□□ -0.82
USP3-218ENST00000560202 ZNF486Q96H40 463 aaPredicted RBP9.92□□□□□ -0.82
USP3-218ENST00000560202 FUNDC2Q9BWH2 189 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 TTTY10Q9BZA0 68 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 SLC25A18Q9H1K4 315 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 ISG20L2Q9H9L3 353 aaKnown RBP9.92□□□□□ -0.82
USP3-218ENST00000560202 SEC61A2Q9H9S3 476 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 LAMP5Q9UJQ1 280 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 ZMIZ1Q9ULJ6 1067 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 KLHDC2Q9Y2U9 406 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 TMEM14AQ9Y6G1 99 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 CACNA1GO43497 2377 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 ZZEF1O43149 2961 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 KIAA1549Q9HCM3 1950 aa9.92□□□□□ -0.82
USP3-218ENST00000560202 SPENQ96T58 3664 aaKnown RBP9.91□□□□□ -0.82
USP3-218ENST00000560202 MT-ND5P03915 603 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 SCG5P05408 212 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 PSKH1P11801 424 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms