RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 PGCP20142 388 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 ENPP1P22413 925 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 GADD45AP24522 165 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 VBP1P61758 197 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 TUBA1BP68363 451 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 MED22Q15528 200 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 TIMM50Q3ZCQ8 353 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 ALG10BQ5I7T1 473 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 CLEC12AQ5QGZ9 265 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 AADACL4Q5VUY2 407 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 NXNL2Q5VZ03 156 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 C12orf54Q6X4T0 127 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 TUBA1AQ71U36 451 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 BCDIN3DQ7Z5W3 292 aaKnown RBP10.99□□□□□ -0.65
SHMT2-230ENST00000557427 LSRQ86X29 649 aaPredicted RBP10.99□□□□□ -0.65
SHMT2-230ENST00000557427 CROCCP3Q8IVE0 287 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 LNX2Q8N448 690 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 PFN4Q8NHR9 129 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 FANK1Q8TC84 345 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 DNAJA4Q8WW22 397 aaPredicted RBP10.99□□□□□ -0.65
SHMT2-230ENST00000557427 TMEM234Q8WY98 164 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 ZNF775Q96BV0 537 aaPredicted RBP10.99□□□□□ -0.65
SHMT2-230ENST00000557427 DNAJA3Q96EY1 480 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 GMPPAQ96IJ6 420 aaPredicted RBP10.99□□□□□ -0.65
SHMT2-230ENST00000557427 OR5M11Q96RB7 305 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 TAPBPLQ9BX59 468 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 C12orf49Q9H741 205 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 MEPEQ9NQ76 525 aaPredicted RBP10.99□□□□□ -0.65
SHMT2-230ENST00000557427 PLSCR4Q9NRQ2 329 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 SERINC1Q9NRX5 453 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 C20orf141Q9NUB4 165 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 TAS2R16Q9NYV7 291 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 RPS6KB2Q9UBS0 482 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 BAIAP2Q9UQB8 552 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 SIGLEC7Q9Y286 467 aa10.99□□□□□ -0.65
SHMT2-230ENST00000557427 EXOSC1Q9Y3B2 195 aaKnown RBP10.99□□□□□ -0.65
SHMT2-230ENST00000557427 CCRL2O00421 344 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 BHLHE40O14503 412 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 MYL12BO14950 172 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 SSX4O60224 188 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 PTP4A3O75365 173 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 IGF2P01344 180 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 CD8AP01732 235 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 SCG5P05408 212 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 TFPIP10646 304 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 CD8BP10966 210 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 MTNR1AP48039 350 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 CLK1P49759 484 aaKnown RBP10.98□□□□□ -0.65
SHMT2-230ENST00000557427 ENTPD1P49961 510 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 FXYD6P3P58550 94 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 NCS1P62166 190 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 LOXL1Q08397 574 aaPredicted RBP10.98□□□□□ -0.65
SHMT2-230ENST00000557427 MLLT11Q13015 90 aaPredicted RBP10.98□□□□□ -0.65
SHMT2-230ENST00000557427 TMED1Q13445 227 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 C1DQ13901 141 aaKnown RBP10.98□□□□□ -0.65
SHMT2-230ENST00000557427 GUSBP1Q15486 140 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 SPHARQ15513 63 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 ZNF829Q3KNS6 432 aaPredicted RBP10.98□□□□□ -0.65
SHMT2-230ENST00000557427 SLC25A53Q5H9E4 307 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 FAM120AOSQ5T036 256 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 LIPNQ5VXI9 398 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 CYB5R2Q6BCY4 276 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 SMARCD3Q6STE5 483 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 USP43Q70EL4 1123 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 FCRLAQ7L513 359 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 GID4Q8IVV7 300 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 TUSC5Q8IXB3 177 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.98□□□□□ -0.65
SHMT2-230ENST00000557427 NDNFQ8TB73 568 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 RNF217Q8TC41 542 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 ABHD3Q8WU67 409 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 SMAP2Q8WU79 429 aaPredicted RBP10.98□□□□□ -0.65
SHMT2-230ENST00000557427 ST8SIA1Q92185 356 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 RPL3LQ92901 407 aaKnown RBP10.98□□□□□ -0.65
SHMT2-230ENST00000557427 ZHX1-C8orf76Q96EF9 292 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 RNFT2Q96EX2 444 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 OPALINQ96PE5 141 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 OR5B2Q96R09 309 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 SH3GL3Q99963 347 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 JAM3Q9BX67 310 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 SLC19A3Q9BZV2 496 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 ISYNA1Q9NPH2 558 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 GLRX2Q9NS18 164 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 OSGIN1Q9UJX0 560 aa10.98□□□□□ -0.65
SHMT2-230ENST00000557427 EXOGQ9Y2C4 368 aaKnown RBP10.98□□□□□ -0.65
SHMT2-230ENST00000557427 A0A087WUJ7 227 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 TMEM129A0AVI4 362 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 SS18L1O75177 396 aaPredicted RBP10.97□□□□□ -0.65
SHMT2-230ENST00000557427 MYL12AP19105 171 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 HTR1FP30939 366 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 SLC9A3P48764 834 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 CDH11P55287 796 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 COPZ1P61923 177 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 LSM3P62310 102 aaKnown RBP10.97□□□□□ -0.65
SHMT2-230ENST00000557427 FAPQ12884 760 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 SELENBP1Q13228 472 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 ZNF239Q16600 458 aaKnown RBP10.97□□□□□ -0.65
SHMT2-230ENST00000557427 TSTQ16762 297 aaKnown RBP10.97□□□□□ -0.65
SHMT2-230ENST00000557427 ARMC4Q5T2S8 1044 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 STAC2Q6ZMT1 411 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms