RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 SMPD2O60906 423 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 CD74P04233 296 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 EPS15P42566 896 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 CCT3P49368 545 aaKnown RBP1.61□□□□□ -2.15
SCFD1-216ENST00000555550 ZNF138P52744 262 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 PRKCDQ05655 676 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 ORMDL2Q53FV1 153 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 ANKRD22Q5VYY1 191 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 SPINT4Q6UDR6 99 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 FAM83FQ8NEG4 500 aaPredicted RBP1.61□□□□□ -2.15
SCFD1-216ENST00000555550 SCFD1Q8WVM8 642 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 ZCCHC13Q8WW36 166 aaKnown RBP1.61□□□□□ -2.15
SCFD1-216ENST00000555550 TVP23CQ96ET8 276 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 PLEKHA8Q96JA3 519 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 IFT74Q96LB3 600 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 C16orf45Q96MC5 204 aaPredicted RBP1.61□□□□□ -2.15
SCFD1-216ENST00000555550 CNN2Q99439 309 aaKnown RBP1.61□□□□□ -2.15
SCFD1-216ENST00000555550 LHX5Q9H2C1 402 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 FN3KRPQ9HA64 309 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 SAMSN1Q9NSI8 373 aaKnown RBP1.61□□□□□ -2.15
SCFD1-216ENST00000555550 ADAM28Q9UKQ2 775 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 CDH9Q9ULB4 789 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 PIGLQ9Y2B2 252 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 TMED5Q9Y3A6 229 aa1.61□□□□□ -2.15
SCFD1-216ENST00000555550 DNASE2O00115 360 aaPredicted RBP1.6□□□□□ -2.15
SCFD1-216ENST00000555550 B3GALNT1O75752 331 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 HLA-DQB1P01920 261 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 ZNF735P0CB33 412 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 HSPA5P11021 654 aaKnown RBP1.6□□□□□ -2.15
SCFD1-216ENST00000555550 RAB3BP20337 219 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 SSTR5P35346 364 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 MAGEA8P43361 318 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 FBXW4P57775 412 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 POLR2FP61218 127 aaKnown RBP1.6□□□□□ -2.15
SCFD1-216ENST00000555550 ELP6Q0PNE2 266 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 ECH1Q13011 328 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 METTL21CQ5VZV1 264 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 UQCC3Q6UW78 93 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 SNX20Q7Z614 316 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 WDFY1Q8IWB7 410 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 CIRBP-AS1Q8TBR5 109 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 SHC3Q92529 594 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 SLC25A46Q96AG3 418 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 DTNBP1Q96EV8 351 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 FMO2Q99518 471 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 TIMM17AQ99595 171 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 TRIM62Q9BVG3 475 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 FRMD8P1Q9BZ68 369 aaPredicted RBP1.6□□□□□ -2.15
SCFD1-216ENST00000555550 RMND5AQ9H871 391 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 KCNJ16Q9NPI9 418 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 HPF1Q9NWY4 346 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 SH3BGRL2Q9UJC5 107 aa1.6□□□□□ -2.15
SCFD1-216ENST00000555550 SEC16AO15027 2179 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 ZNF98A6NK75 572 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 ZNF716A6NP11 495 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 SPECC1L-ADORA2AF8WAN1 911 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 GOSR2O14653 212 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 GLAP06280 429 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 ZNF688P0C7X2 276 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 CCNB1P14635 433 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 GDI2P50395 445 aaKnown RBP1.59□□□□□ -2.15
SCFD1-216ENST00000555550 TWF1Q12792 350 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 CDC37Q16543 378 aaPredicted RBP1.59□□□□□ -2.15
SCFD1-216ENST00000555550 EXOC3L2Q2M3D2 409 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 SPECC1LQ69YQ0 1117 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 TMEM205Q6UW68 189 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 TMEM105Q8N8V8 129 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 ST20-AS1Q8NBB2 130 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 HSD17B11Q8NBQ5 300 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 OR10R2Q8NGX6 335 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 PIFOQ8TCI5 191 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 NTAN1Q96AB6 310 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 COQ2Q96H96 371 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 CNDP1Q96KN2 507 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 ZNF488Q96MN9 340 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 NPY6RQ99463 290 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 C1orf198Q9H425 327 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 EPS15L1Q9UBC2 864 aa1.59□□□□□ -2.15
SCFD1-216ENST00000555550 DHCR7Q9UBM7 475 aaKnown RBP1.59□□□□□ -2.15
SCFD1-216ENST00000555550 MRPS7Q9Y2R9 242 aaKnown RBP1.59□□□□□ -2.15
SCFD1-216ENST00000555550 PCNX2A6NKB5 2137 aa1.58□□□□□ -2.16
SCFD1-216ENST00000555550 ATP10AO60312 1499 aa1.58□□□□□ -2.16
SCFD1-216ENST00000555550 TRAV26-1A0A087WT03 109 aa1.58□□□□□ -2.16
SCFD1-216ENST00000555550 IGHV1OR15-9A0A0B4J2B8 117 aa1.58□□□□□ -2.16
SCFD1-216ENST00000555550 CENPVL3A0A0U1RRI6 287 aa1.58□□□□□ -2.16
SCFD1-216ENST00000555550 PPP1R2P9O14990 202 aa1.58□□□□□ -2.16
SCFD1-216ENST00000555550 PEX11AO75192 247 aa1.58□□□□□ -2.16
SCFD1-216ENST00000555550 HEXBP07686 556 aa1.58□□□□□ -2.16
SCFD1-216ENST00000555550 VHLP40337 213 aa1.58□□□□□ -2.16
SCFD1-216ENST00000555550 ACAA2P42765 397 aaKnown RBP1.58□□□□□ -2.16
SCFD1-216ENST00000555550 UBE2NP61088 152 aaKnown RBP1.58□□□□□ -2.16
SCFD1-216ENST00000555550 RPS11P62280 158 aaKnown RBP eCLIP1.58□□□□□ -2.16
SCFD1-216ENST00000555550 FBXW12Q6X9E4 464 aa1.58□□□□□ -2.16
SCFD1-216ENST00000555550 METTL13Q8N6R0 699 aa1.58□□□□□ -2.16
SCFD1-216ENST00000555550 C1orf64Q8NEQ6 169 aa1.58□□□□□ -2.16
SCFD1-216ENST00000555550 TRPV1Q8NER1 839 aa1.58□□□□□ -2.16
SCFD1-216ENST00000555550 PSKH2Q96QS6 385 aa1.58□□□□□ -2.16
SCFD1-216ENST00000555550 OR52D1Q9H346 318 aa1.58□□□□□ -2.16
SCFD1-216ENST00000555550 LIN28AQ9H9Z2 209 aaKnown RBP1.58□□□□□ -2.16
SCFD1-216ENST00000555550 TRMT112Q9UI30 125 aaKnown RBP1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms