RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 B9A039 149 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 CELA3BP08861 270 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 MMP7P09237 267 aaPredicted RBP12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 NR4A1P22736 598 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 LAP3P28838 519 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 CALCRP30988 508 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 APLNRP35414 380 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 SERPINF1P36955 418 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 LSM6P62312 80 aaKnown RBP12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 GLO1Q04760 184 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 SNTB2Q13425 540 aaKnown RBP12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 AQP6Q13520 282 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 RAB39AQ14964 217 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 SGCAQ16586 387 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 C11orf71Q6IPW1 123 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 OR2T33Q8NG76 320 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 TEX47Q8TBZ9 253 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 IPCEF1Q8WWN9 437 aaPredicted RBP12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 NRBF2Q96F24 287 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 SAMD8Q96LT4 415 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 ATPIF1Q9UII2 106 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 TIMM10BQ9Y5J6 103 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 FKBP7Q9Y680 259 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 PLCE1Q9P212 2302 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 ROS1P08922 2347 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 IGKV1D-43A0A0B4J1Z2 117 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 H7C1C5 153 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 SLC16A7O60669 478 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 IFNGP01579 166 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 CSF3P09919 207 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 ZNF35P13682 527 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 ANXA8P13928 327 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 FOSL1P15407 271 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 CTLA4P16410 223 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 PCSK6P29122 969 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 GLRXP35754 106 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 EVX1P49640 407 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 PPOXP50336 477 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 LCN6P62502 163 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 YTHDF3Q7Z739 585 aaKnown RBP12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 C10orf67Q8IYJ2 551 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 LRRC18Q8N456 261 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 CACNG6Q9BXT2 260 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 TEX12Q9BXU0 123 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 BCL2L14Q9BZR8 327 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 VNN3Q9NY84 501 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 IL20RAQ9UHF4 553 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 KCNG2Q9UJ96 466 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 KLHL21Q9UJP4 597 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 POLR1DQ9Y2S0 133 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 CMAHPQ9Y471 501 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 CSMD1Q96PZ7 3565 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 ALPK2Q86TB3 2170 aa12.45□□□□□ -0.42
CCDC88C-207ENST00000554051 BHLHE40O14503 412 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 GASTP01350 101 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 OR4A8P0C604 315 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 COX5BP10606 129 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 ZNF32P17041 273 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 CDAP32320 146 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 CENPAP49450 140 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 GDI2P50395 445 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 ADAM8P78325 824 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 ADIPOQQ15848 244 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 KCNMB1Q16558 191 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 SLC36A3Q495N2 470 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 PABPC1L2AQ5JQF8 200 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 LEG1Q6P5S2 330 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 SHQ1Q6PI26 577 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 ARL9Q6T311 187 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 ASRGL1Q7L266 308 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 MYPOPQ86VE0 399 aaPredicted RBP12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 ZNF584Q8IVC4 421 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 LNX2Q8N448 690 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 OR2T4Q8NH00 348 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 DUS3LQ96G46 650 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 BDH2Q9BUT1 245 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 OR2H1Q9GZK4 316 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 EGLN3Q9H6Z9 239 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 MYOZ1Q9NP98 299 aaPredicted RBP12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 ARMC1Q9NVT9 282 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 PDP1Q9P0J1 537 aaPredicted RBP12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 KIF17Q9P2E2 1029 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 ENOPH1Q9UHY7 261 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 GPR160Q9UJ42 338 aa12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 HEATR1Q9H583 2144 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-207ENST00000554051 RIIAD1A6NNX1 92 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 H3BSA7 217 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 ICMTO60725 284 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 CD8AP01732 235 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 HIST1H1CP16403 213 aaKnown RBP12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 ZNF3P17036 446 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 TUBG1P23258 451 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 STOMP27105 288 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 CDKN1AP38936 164 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 RAD52P43351 418 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 BLVRAP53004 296 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 DSCR9P59020 149 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 SELENOVP59797 346 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 HGFACQ04756 655 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms