RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 TGFBR3Q03167 851 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 IRF3Q14653 427 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 CEACAM16Q2WEN9 425 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 SFRP5Q5T4F7 317 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF684Q5T5D7 378 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 OR7E24Q6IFN5 339 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 ANKRD16Q6P6B7 361 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 DEGS2Q6QHC5 323 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 PRSS48Q7RTY5 328 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 P2RY8Q86VZ1 359 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 CDC20BQ86Y33 519 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 LIX1LQ8IVB5 337 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF433Q8N7K0 673 aaPredicted RBP8.41□□□□□ -1.06
LIMA1-211ENST00000552338 FAM169BQ8N8A8 192 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF454Q8N9F8 522 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF610Q8N9Z0 462 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 RELL2Q8NC24 303 aaPredicted RBP8.41□□□□□ -1.06
LIMA1-211ENST00000552338 PROKR2Q8NFJ6 384 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 OR1K1Q8NGR3 316 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 OTOSQ8NHW6 89 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 BCL2L2Q92843 193 aaPredicted RBP8.41□□□□□ -1.06
LIMA1-211ENST00000552338 LGALS12Q96DT0 336 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 OBP2BQ9NPH6 170 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 ATPIF1Q9UII2 106 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 DIMT1Q9UNQ2 313 aaKnown RBP8.41□□□□□ -1.06
LIMA1-211ENST00000552338 MYRFQ9Y2G1 1151 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 TMEM14AQ9Y6G1 99 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 COMMD3-BMI1R4GMX3 469 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 FAM208BQ5VWN6 2430 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 RTTNQ86VV8 2226 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 PHYHO14832 338 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 XPNPEP2O43895 674 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 FADS2O95864 444 aaKnown RBP8.4□□□□□ -1.06
LIMA1-211ENST00000552338 PRB1P04280 392 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 MMP7P09237 267 aaPredicted RBP8.4□□□□□ -1.06
LIMA1-211ENST00000552338 OR8G3PP0DMU2 310 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 GNLYP22749 145 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 DCTDP32321 178 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 PYCR1P32322 319 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 GUCA1AP43080 201 aaPredicted RBP8.4□□□□□ -1.06
LIMA1-211ENST00000552338 ENTPD1P49961 510 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 FOXG1P55316 489 aaPredicted RBP8.4□□□□□ -1.06
LIMA1-211ENST00000552338 ACTC1P68032 377 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 ACTA1P68133 377 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 ROM1Q03395 351 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 FAPQ12884 760 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 AQP6Q13520 282 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 ENDOGQ14249 297 aaKnown RBP8.4□□□□□ -1.06
LIMA1-211ENST00000552338 IGFBP7Q16270 282 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 GABRA6Q16445 453 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 C3orf36Q3SXR2 165 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 KLHL12Q53G59 568 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 CARD17Q5XLA6 110 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 XKRXQ6PP77 449 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 C3P1Q6ZMU1 363 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 SLC22A24Q8N4F4 322 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF808Q8N4W9 903 aaPredicted RBP8.4□□□□□ -1.06
LIMA1-211ENST00000552338 ACBD7Q8N6N7 88 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 CNEP1R1Q8N9A8 125 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF511Q8NB15 262 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF485Q8NCK3 441 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF540Q8NDQ6 660 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 BPIFB6Q8NFQ5 453 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 OR52I1Q8NGK6 324 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 C11orf40Q8WZ69 217 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 MYDGFQ969H8 173 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 RNFT2Q96EX2 444 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 CCDC120Q96HB5 630 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 TMEM80Q96HE8 168 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF75AQ96N20 296 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 ALKBH3Q96Q83 286 aaPredicted RBP8.4□□□□□ -1.06
LIMA1-211ENST00000552338 INTS14Q96SY0 518 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 MYCBPQ99417 103 aaPredicted RBP8.4□□□□□ -1.06
LIMA1-211ENST00000552338 RBM24Q9BX46 236 aaKnown RBP8.4□□□□□ -1.06
LIMA1-211ENST00000552338 WDR76Q9H967 626 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 MOV10Q9HCE1 1003 aaKnown RBP8.4□□□□□ -1.06
LIMA1-211ENST00000552338 PAK1IP1Q9NWT1 392 aaPredicted RBP8.4□□□□□ -1.06
LIMA1-211ENST00000552338 B3GNT2Q9NY97 397 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF224Q9NZL3 707 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 NBEAQ8NFP9 2946 aa8.4□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF593O00488 134 aaPredicted RBP8.39□□□□□ -1.07
LIMA1-211ENST00000552338 FAM20BO75063 409 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 TMCC2O75069 709 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 KRT33AO76009 404 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 FARS2O95363 451 aaKnown RBP8.39□□□□□ -1.07
LIMA1-211ENST00000552338 RAB36O95755 333 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 HTR1AP08908 422 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 COX5BP10606 129 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 CAPZA2P47755 286 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 NUDT6P53370 316 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 TUBA4AP68366 448 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 SIRPAP78324 504 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 ARF1P84077 181 aaKnown RBP8.39□□□□□ -1.07
LIMA1-211ENST00000552338 EGR3Q06889 387 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 ST3GAL4Q11206 333 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 GALEQ14376 348 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 KRTAP27-1Q3LI81 207 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 STAC2Q6ZMT1 411 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 KCTD20Q7Z5Y7 419 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 ZNF786Q8N393 782 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms