RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 SYNGR4O95473 234 aa14.23□□□□□ -0.13
CUX1-211ENST00000546411 AGTR1P30556 359 aa14.23□□□□□ -0.13
CUX1-211ENST00000546411 RAP2BP61225 183 aa14.23□□□□□ -0.13
CUX1-211ENST00000546411 BDH1Q02338 343 aa14.23□□□□□ -0.13
CUX1-211ENST00000546411 TOMM34Q15785 309 aaPredicted RBP14.23□□□□□ -0.13
CUX1-211ENST00000546411 TMEM81Q6P7N7 255 aa14.23□□□□□ -0.13
CUX1-211ENST00000546411 ANGPTL5Q86XS5 388 aa14.23□□□□□ -0.13
CUX1-211ENST00000546411 MIB2Q96AX9 1013 aa14.23□□□□□ -0.13
CUX1-211ENST00000546411 PTDSS2Q9BVG9 487 aa14.23□□□□□ -0.13
CUX1-211ENST00000546411 STRADBQ9C0K7 418 aa14.23□□□□□ -0.13
CUX1-211ENST00000546411 CHRDQ9H2X0 955 aa14.23□□□□□ -0.13
CUX1-211ENST00000546411 GLI4P10075 376 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 GDF1P27539 372 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 GNRHRP30968 328 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 FMODQ06828 376 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 TRIM61Q5EBN2 209 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 EIF5AL1Q6IS14 154 aaKnown RBP14.22□□□□□ -0.13
CUX1-211ENST00000546411 BORCS8Q96FH0 119 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 DHRS1Q96LJ7 313 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 CDC6Q99741 560 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 RNF32Q9H0A6 362 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 SIRT4Q9Y6E7 314 aaPredicted RBP14.22□□□□□ -0.13
CUX1-211ENST00000546411 EIF4E2O60573 245 aaKnown RBP14.22□□□□□ -0.13
CUX1-211ENST00000546411 DBHP09172 617 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 MSL3P1P0C860 447 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 CLDN20P56880 219 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 HSF1Q00613 529 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 ABHD17BQ5VST6 288 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 HACD4Q5VWC8 232 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 RHOUQ7L0Q8 258 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 ZNF100Q8IYN0 542 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 UPRTQ96BW1 309 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 SLC5A7Q9GZV3 580 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 RABL2AQ9UBK7 228 aaPredicted RBP14.22□□□□□ -0.13
CUX1-211ENST00000546411 RABL2BQ9UNT1 228 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 PRSS37A4D1T9 235 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 MTRF1O75570 445 aaKnown RBP14.22□□□□□ -0.13
CUX1-211ENST00000546411 CD79AP11912 226 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 NFYAP23511 347 aaPredicted RBP14.22□□□□□ -0.13
CUX1-211ENST00000546411 FCARP24071 287 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 ZNF93P35789 620 aaPredicted RBP14.22□□□□□ -0.13
CUX1-211ENST00000546411 ZNF117Q03924 483 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 OPN5Q6U736 354 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 MAMSTRQ6ZN01 415 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 SPAG16Q8N0X2 631 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 OR52B4Q8NGK2 314 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 PIGTQ969N2 578 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 HRASLSQ9HDD0 168 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 TRAPPC4Q9Y296 219 aa14.22□□□□□ -0.13
CUX1-211ENST00000546411 ABCD3P28288 659 aa14.21□□□□□ -0.13
CUX1-211ENST00000546411 MNX1P50219 401 aaPredicted RBP14.21□□□□□ -0.13
CUX1-211ENST00000546411 EIF5AP63241 154 aaKnown RBP14.21□□□□□ -0.13
CUX1-211ENST00000546411 SPTSSAQ969W0 71 aa14.21□□□□□ -0.13
CUX1-211ENST00000546411 FKRPQ9H9S5 495 aa14.21□□□□□ -0.13
CUX1-211ENST00000546411 ASF1BQ9NVP2 202 aa14.21□□□□□ -0.13
CUX1-211ENST00000546411 HIF3AQ9Y2N7 669 aa14.21□□□□□ -0.13
CUX1-211ENST00000546411 LSM5Q9Y4Y9 91 aaKnown RBP14.21□□□□□ -0.13
CUX1-211ENST00000546411 LOC100289279A0A1B0GTE1 492 aa14.21□□□□□ -0.13
CUX1-211ENST00000546411 BHLHE40O14503 412 aa14.21□□□□□ -0.13
CUX1-211ENST00000546411 PLPP2O43688 288 aa14.21□□□□□ -0.13
CUX1-211ENST00000546411 CRYZL1O95825 349 aa14.21□□□□□ -0.13
CUX1-211ENST00000546411 ZGLP1P0C6A0 271 aa14.21□□□□□ -0.13
CUX1-211ENST00000546411 CALCBP10092 127 aa14.21□□□□□ -0.13
CUX1-211ENST00000546411 NME1P15531 152 aaKnown RBP14.21□□□□□ -0.13
CUX1-211ENST00000546411 PER3P56645 1201 aa14.21□□□□□ -0.13
CUX1-211ENST00000546411 FAM76BQ5HYJ3 339 aa14.21□□□□□ -0.13
CUX1-211ENST00000546411 FAM199XQ6PEV8 388 aaPredicted RBP14.21□□□□□ -0.13
CUX1-211ENST00000546411 SYT13Q7L8C5 426 aa14.21□□□□□ -0.13
CUX1-211ENST00000546411 OR51E1Q8TCB6 317 aa14.21□□□□□ -0.13
CUX1-211ENST00000546411 TMEM59Q9BXS4 323 aa14.21□□□□□ -0.13
CUX1-211ENST00000546411 ZNF436Q9C0F3 470 aaPredicted RBP14.21□□□□□ -0.13
CUX1-211ENST00000546411 VWA8A3KMH1 1905 aa14.21□□□□□ -0.13
CUX1-211ENST00000546411 PATJQ8NI35 1801 aa14.21□□□□□ -0.14
CUX1-211ENST00000546411 SEMA7AO75326 666 aa14.21□□□□□ -0.14
CUX1-211ENST00000546411 MT-ATP6P00846 226 aa14.21□□□□□ -0.14
CUX1-211ENST00000546411 CD3DP04234 171 aa14.21□□□□□ -0.14
CUX1-211ENST00000546411 C2orf76Q3KRA6 126 aa14.21□□□□□ -0.14
CUX1-211ENST00000546411 ZNF679Q8IYX0 411 aa14.21□□□□□ -0.14
CUX1-211ENST00000546411 GTPBP8Q8N3Z3 284 aaPredicted RBP14.21□□□□□ -0.14
CUX1-211ENST00000546411 OR10K1Q8NGX5 313 aa14.21□□□□□ -0.14
CUX1-211ENST00000546411 OR1L3Q8NH93 324 aa14.21□□□□□ -0.14
CUX1-211ENST00000546411 FBLIM1Q8WUP2 373 aa14.21□□□□□ -0.14
CUX1-211ENST00000546411 WDFY2Q96P53 400 aa14.21□□□□□ -0.14
CUX1-211ENST00000546411 ABHD6Q9BV23 337 aa14.21□□□□□ -0.14
CUX1-211ENST00000546411 SMIM3Q9BZL3 60 aa14.21□□□□□ -0.14
CUX1-211ENST00000546411 VN1R1Q9GZP7 353 aa14.21□□□□□ -0.14
CUX1-211ENST00000546411 WWTR1Q9GZV5 400 aa14.21□□□□□ -0.14
CUX1-211ENST00000546411 LAT2Q9GZY6 243 aa14.21□□□□□ -0.14
CUX1-211ENST00000546411 FSCN3Q9NQT6 498 aa14.21□□□□□ -0.14
CUX1-211ENST00000546411 M0R036 132 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 FCGR2AP12318 317 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 PMPCAQ10713 525 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 ETFDHQ16134 617 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 PXKQ7Z7A4 578 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 FAM109AQ8N4B1 249 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 PRR18Q8N4B5 295 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 OR2I1PQ8NGU4 316 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 PHYHIPQ92561 330 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 PRRT1Q99946 306 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 EHFQ9NZC4 300 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms