RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 NPIPA1Q9UND3 350 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 WDFY3Q8IZQ1 3526 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 TRABD2BA6NFA1 517 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 ORC5O43913 435 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 HRGP04196 525 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 GP1BAP07359 652 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 KLF9Q13886 244 aaPredicted RBP12.33□□□□□ -0.44
RTN3-210ENST00000540798 OTPQ5XKR4 325 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 DNM1P34Q6PK57 102 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 DND1Q8IYX4 353 aaKnown RBP12.33□□□□□ -0.44
RTN3-210ENST00000540798 M1APQ8TC57 530 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 ST7LQ8TDW4 575 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 RNF170Q96K19 258 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 C7orf50Q9BRJ6 194 aaKnown RBP12.33□□□□□ -0.44
RTN3-210ENST00000540798 SERINC1Q9NRX5 453 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 FBXL2Q9UKC9 423 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 FBXO4Q9UKT5 387 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 CLEC4AQ9UMR7 237 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 RAB40ALP0C0E4 278 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 SOX2P48431 317 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 SRP9P49458 86 aaKnown RBP12.33□□□□□ -0.44
RTN3-210ENST00000540798 MYBPHQ13203 477 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 EIF2B1Q14232 305 aaKnown RBP12.33□□□□□ -0.44
RTN3-210ENST00000540798 EXT1Q16394 746 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 BTBD16Q32M84 506 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 DBX2Q6ZNG2 339 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 ZNF433Q8N7K0 673 aaPredicted RBP12.33□□□□□ -0.44
RTN3-210ENST00000540798 RAB40AQ8WXH6 277 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 TMEM106AQ96A25 262 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 MRPL13Q9BYD1 178 aaKnown RBP12.33□□□□□ -0.44
RTN3-210ENST00000540798 LRP12Q9Y561 859 aa12.33□□□□□ -0.44
RTN3-210ENST00000540798 IGKV1D-43A0A0B4J1Z2 117 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 MPZL1O95297 269 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 KLK3P07288 261 aaPredicted RBP12.32□□□□□ -0.44
RTN3-210ENST00000540798 SYPP08247 313 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 CD37P11049 281 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 ADH6P28332 368 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 POU3F1Q03052 451 aaPredicted RBP12.32□□□□□ -0.44
RTN3-210ENST00000540798 FMODQ06828 376 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 MFGE8Q08431 387 aaPredicted RBP12.32□□□□□ -0.44
RTN3-210ENST00000540798 INPP5JQ15735 1006 aaPredicted RBP12.32□□□□□ -0.44
RTN3-210ENST00000540798 ASPHD2Q6ICH7 369 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 C3orf33Q6P1S2 294 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 FCRLAQ7L513 359 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 ARMC10Q8N2F6 343 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 SH2D2AQ9NP31 389 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 ZNF275Q9NSD4 429 aaPredicted RBP12.32□□□□□ -0.44
RTN3-210ENST00000540798 KLHL9Q9P2J3 617 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 FOXJ3Q9UPW0 622 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 HS3ST3B1Q9Y662 390 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 FREM3P0C091 2139 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 TECTAO75443 2155 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 EML6Q6ZMW3 1958 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 INMT-MINDY4F8WBC2 141 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 SULT1B1O43704 296 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 CD3GP09693 182 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 ARSBP15848 533 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 ACP1P24666 158 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 GALK2Q01415 458 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 C19orf57Q0VDD7 668 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 DYRK1AQ13627 763 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 TIGD3Q6B0B8 471 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 DNM1P46Q6ZS02 220 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 TCTE3Q8IZS6 198 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 RELTQ969Z4 430 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 MIB2Q96AX9 1013 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 HAVCR1Q96D42 359 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 ULBP3Q9BZM4 244 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 OR2B2Q9GZK3 357 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 PLSCR3Q9NRY6 295 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 RPH3AQ9Y2J0 694 aaPredicted RBP12.32□□□□□ -0.44
RTN3-210ENST00000540798 ALPK2Q86TB3 2170 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 CUL9Q8IWT3 2517 aa12.32□□□□□ -0.44
RTN3-210ENST00000540798 H3BML4 177 aa12.31□□□□□ -0.44
RTN3-210ENST00000540798 ALX3O95076 343 aa12.31□□□□□ -0.44
RTN3-210ENST00000540798 PTH2RP49190 550 aa12.31□□□□□ -0.44
RTN3-210ENST00000540798 RIDAP52758 137 aaKnown RBP12.31□□□□□ -0.44
RTN3-210ENST00000540798 KRT77Q7Z794 578 aa12.31□□□□□ -0.44
RTN3-210ENST00000540798 SIAH3Q8IW03 269 aa12.31□□□□□ -0.44
RTN3-210ENST00000540798 TOMM5Q8N4H5 51 aa12.31□□□□□ -0.44
RTN3-210ENST00000540798 OR2Y1Q8NGV0 311 aa12.31□□□□□ -0.44
RTN3-210ENST00000540798 DHRS9Q9BPW9 319 aa12.31□□□□□ -0.44
RTN3-210ENST00000540798 MED29Q9NX70 200 aa12.31□□□□□ -0.44
RTN3-210ENST00000540798 A8MV72 311 aaPredicted RBP12.31□□□□□ -0.44
RTN3-210ENST00000540798 B4E171 279 aa12.31□□□□□ -0.44
RTN3-210ENST00000540798 ERVH48-1M5A8F1 160 aa12.31□□□□□ -0.44
RTN3-210ENST00000540798 KHDRBS3O75525 346 aaKnown RBP12.31□□□□□ -0.44
RTN3-210ENST00000540798 CELA2AP08217 269 aa12.31□□□□□ -0.44
RTN3-210ENST00000540798 FKBP2P26885 142 aaKnown RBP12.31□□□□□ -0.44
RTN3-210ENST00000540798 TSPAN7P41732 249 aa12.31□□□□□ -0.44
RTN3-210ENST00000540798 DEGS2Q6QHC5 323 aa12.31□□□□□ -0.44
RTN3-210ENST00000540798 LILRB1Q8NHL6 650 aaPredicted RBP12.31□□□□□ -0.44
RTN3-210ENST00000540798 UBASH3BQ8TF42 649 aa12.31□□□□□ -0.44
RTN3-210ENST00000540798 MR1Q95460 341 aa12.31□□□□□ -0.44
RTN3-210ENST00000540798 ZFP3Q96NJ6 502 aa12.31□□□□□ -0.44
RTN3-210ENST00000540798 RANGRFQ9HD47 186 aaPredicted RBP12.31□□□□□ -0.44
RTN3-210ENST00000540798 SLC22A13Q9Y226 551 aa12.31□□□□□ -0.44
RTN3-210ENST00000540798 PTRH2Q9Y3E5 179 aaKnown RBP12.31□□□□□ -0.44
RTN3-210ENST00000540798 R4GMQ9 66 aa12.31□□□□□ -0.44
RTN3-210ENST00000540798 MUC3AQ02505 3323 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms