RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 FAM159AQ6UWV7 190 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 GDPGP1Q6ZNW5 385 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 CDHR3Q6ZTQ4 885 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 TRMT11Q7Z4G4 463 aaKnown RBP2.8□□□□□ -1.96
USP48-215ENST00000534705 SLC22A16Q86VW1 577 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 PLCZ1Q86YW0 608 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 CCDC36Q8IYA8 594 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 TCTE3Q8IZS6 198 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 GCNT2Q8N0V5 402 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 UBE2J2Q8N2K1 259 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 DEFB119Q8N690 84 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 CCNYL1Q8N7R7 359 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 AQP11Q8NBQ7 271 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 OR10G7Q8NGN6 311 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 ZNF671Q8TAW3 534 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 SLC22A8Q8TCC7 542 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 ZFAND1Q8TCF1 268 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 DYNC2LI1Q8TCX1 351 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 TCP10LQ8TDR4 215 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 DCAKDQ8WVC6 231 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 RASL10AQ92737 203 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 HAS2Q92819 552 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 RPL3LQ92901 407 aaKnown RBP2.8□□□□□ -1.96
USP48-215ENST00000534705 TCEAL3Q969E4 200 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 YIPF5Q969M3 257 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 NTAN1Q96AB6 310 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 SLC41A3Q96GZ6 507 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 CNBD2Q96M20 576 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 MCEEQ96PE7 176 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 TMEM246Q9BRR3 403 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 DCUN1D5Q9BTE7 237 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 C9orf16Q9BUW7 83 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 XKR8Q9H6D3 395 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 ZDHHC6Q9H6R6 413 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 NIPAL2Q9H841 368 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 MRM3Q9HC36 420 aaKnown RBP2.8□□□□□ -1.96
USP48-215ENST00000534705 YAE1D1Q9NRH1 226 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 MED9Q9NWA0 146 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 GPATCH2LQ9NWQ4 482 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 FBXL12Q9NXK8 326 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 COA4Q9NYJ1 87 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 PSMC3IPQ9P2W1 217 aaPredicted RBP2.8□□□□□ -1.96
USP48-215ENST00000534705 OR12D3Q9UGF7 316 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 IL20RAQ9UHF4 553 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 FBXL4Q9UKA2 621 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 PILRBQ9UKJ0 227 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 STAP1Q9ULZ2 295 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 CLEC4AQ9UMR7 237 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 PLCL2Q9UPR0 1127 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 ERVK-19Q9WJR5 959 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 HS3ST2Q9Y278 367 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 MRPS2Q9Y399 296 aaKnown RBP2.8□□□□□ -1.96
USP48-215ENST00000534705 PRELID3BQ9Y3B1 194 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 DSPP15924 2871 aaKnown RBP2.8□□□□□ -1.96
USP48-215ENST00000534705 ANKRD11Q6UB99 2663 aaPredicted RBP2.8□□□□□ -1.96
USP48-215ENST00000534705 IGF2RP11717 2491 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 DOCK10Q96BY6 2186 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 APC2O95996 2303 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 PTPRQQ9UMZ3 2332 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 LOC400499M0QZD8 3231 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 URB1O60287 2271 aaKnown RBP2.79□□□□□ -1.96
USP48-215ENST00000534705 CFAP47Q6ZTR5 3102 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 MED13Q9UHV7 2174 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP2.79□□□□□ -1.96
USP48-215ENST00000534705 A0A0G2JND7 137 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 TRBV4-1A0A0J9YWV2 114 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 A0A0U1RRA0 63 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 CXorf51AA0A1B0GTR3 108 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 TUBAL3A6NHL2 446 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 NKX6-3A6NJ46 265 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 C12orf71A8MTZ7 269 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 C17orf105B2RV13 164 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 H0YIG0 161 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 WRBO00258 174 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 LATO43561 262 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 DFNA5O60443 496 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 TRIM3O75382 744 aaPredicted RBP2.79□□□□□ -1.96
USP48-215ENST00000534705 LRCH4O75427 683 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 UGT2B17O75795 530 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 OR7A10O76100 309 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 NXPH4O95158 308 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 TSPAN12O95859 305 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 IGHV3-13P01766 116 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 PROS1P07225 676 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 APRTP07741 180 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 RHOCP08134 193 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 STAG3L3P0CL85 134 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 RALBP11234 206 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 ZNF3P17036 446 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 PDHA2P29803 388 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 ERP29P30040 261 aaKnown RBP2.79□□□□□ -1.96
USP48-215ENST00000534705 MIPP30301 263 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 SERPINB1P30740 379 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 FCGR2BP31994 310 aaPredicted RBP2.79□□□□□ -1.96
USP48-215ENST00000534705 RPS5P46782 204 aaKnown RBP2.79□□□□□ -1.96
USP48-215ENST00000534705 OR3A1P47881 315 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 UGT2B15P54855 530 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 GPX6P59796 221 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 SLC25A11Q02978 314 aaKnown RBP2.79□□□□□ -1.96
USP48-215ENST00000534705 ZNF177Q13360 481 aaPredicted RBP2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms