RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 RAB40AQ8WXH6 277 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 LINC01599Q8WXQ3 324 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 KCTD13Q8WZ19 329 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 OR1E3Q8WZA6 343 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 HAS2Q92819 552 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 GHSRQ92847 366 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 CDS1Q92903 461 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 FGF11Q92914 225 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 BPIFA2Q96DR5 249 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 MRGPRX1Q96LB2 322 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 ZNF48Q96MX3 618 aaPredicted RBP5.28□□□□□ -1.56
CD44-225ENST00000527326 IP6K3Q96PC2 410 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 PANX1Q96RD7 426 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 SYT3Q9BQG1 590 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 C20orf144Q9BQM9 153 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 ACTRT3Q9BYD9 372 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 SLC17A9Q9BYT1 436 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 OR2J1Q9GZK6 312 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 POLR2J3Q9H1A7 115 aaKnown RBP5.28□□□□□ -1.56
CD44-225ENST00000527326 CHST8Q9H2A9 424 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 ARV1Q9H2C2 271 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 ADGRL4Q9HBW9 690 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 AGO4Q9HCK5 861 aaKnown RBP5.28□□□□□ -1.56
CD44-225ENST00000527326 TRIM36Q9NQ86 728 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 DDIT4Q9NX09 232 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 SOHLH2Q9NX45 425 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 TAS2R13Q9NYV9 303 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 TVP23BQ9NYZ1 205 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 IL17CQ9P0M4 197 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 GALPQ9UBC7 116 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 CD84Q9UIB8 345 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 TSPAN16Q9UKR8 245 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 PADI1Q9ULC6 663 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 FOXJ3Q9UPW0 622 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 AKT3Q9Y243 479 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 EXOGQ9Y2C4 368 aaKnown RBP5.28□□□□□ -1.56
CD44-225ENST00000527326 ZNF281Q9Y2X9 895 aa5.28□□□□□ -1.56
CD44-225ENST00000527326 PATJQ8NI35 1801 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 ANKRD36A6QL64 1941 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 TRBV6-7A0A0A0MS04 114 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 A0A0G2JN53 185 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 A0A1B0GW64 132 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 XKRY2A2RUG3 117 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 PRAMEF27A3QJZ7 478 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 CLEC18AA5D8T8 446 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 NPEPPSL1A6NEC2 478 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 VSTM5A8MXK1 200 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 UMAD1C9J7I0 102 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 NPIPA7E9PJI5 369 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 DVL2O14641 736 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 TAAR5O14804 337 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 FLRT2O43155 660 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 CYB5BO43169 146 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 SEPT4O43236 478 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 COCHO43405 550 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 CDC40O60508 579 aaKnown RBP eCLIP5.27□□□□□ -1.57
CD44-225ENST00000527326 TXNDC12O95881 172 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 IGHEP01854 428 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 AMBPP02760 352 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 IFNW1P05000 195 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 ARG1P05089 322 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 UMODP07911 640 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 NPIPA8P0DM63 369 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 SCGB1A1P11684 91 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 FOLR1P15328 257 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 MAKP20794 623 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 PRPH2P23942 346 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 CD34P28906 385 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 CHRNB4P30926 498 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 OR10J1P30954 320 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 GRK4P32298 578 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 EFNA3P52797 238 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 CRYBA2P53672 197 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 CRYBB1P53674 252 aaPredicted RBP5.27□□□□□ -1.57
CD44-225ENST00000527326 PRKAG1P54619 331 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 UCP2P55851 309 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 WNT3AP56704 352 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 JAG1P78504 1218 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 ARF5P84085 180 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 SSBP1Q04837 148 aaKnown RBP5.27□□□□□ -1.57
CD44-225ENST00000527326 SCAPQ12770 1279 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 ZNF235Q14590 738 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 CNN3Q15417 329 aaKnown RBP5.27□□□□□ -1.57
CD44-225ENST00000527326 TAF13Q15543 124 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 RPE65Q16518 533 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 CSRP2Q16527 193 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 SLC25A52Q3SY17 297 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 TM4SF20Q53R12 229 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 PDZD11Q5EBL8 140 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 DCST1Q5T197 706 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 GFI1BQ5VTD9 330 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 TCTN3Q6NUS6 607 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 ZNF322Q6U7Q0 402 aaPredicted RBP5.27□□□□□ -1.57
CD44-225ENST00000527326 UNQ6126/PRO20091Q6UXV3 157 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 DPY19L2P2Q6ZN68 376 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 ZNF705AQ6ZN79 300 aaPredicted RBP5.27□□□□□ -1.57
CD44-225ENST00000527326 DNM1P46Q6ZS02 220 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 SLC25A26Q70HW3 274 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 MTSS1LQ765P7 747 aa5.27□□□□□ -1.57
CD44-225ENST00000527326 TAS1R1Q7RTX1 841 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms