RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 CCNJQ5T5M9 372 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 ARL9Q6T311 187 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 NIPA1Q7RTP0 329 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 PDIK1LQ8N165 341 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 EID2Q8N6I1 236 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 OR10J6PQ8NGY7 276 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 CXorf40AQ8TE69 158 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 NEURL3Q96EH8 262 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 OR10C1Q96KK4 312 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 SAV1Q9H4B6 383 aaPredicted RBP2.31□□□□□ -2.04
CD44-215ENST00000525241 KLHL28Q9NXS3 571 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 MARCOQ9UEW3 520 aaPredicted RBP2.31□□□□□ -2.04
CD44-215ENST00000525241 TMCC3Q9ULS5 477 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 ING4Q9UNL4 249 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 ASB3Q9Y575 518 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 TNS2Q63HR2 1409 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 ADAMTS13Q76LX8 1427 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 ZNF816-ZNF321PA0A0X1KG74 233 aa2.3□□□□□ -2.04
CD44-215ENST00000525241 TMEM223A0PJW6 202 aa2.3□□□□□ -2.04
CD44-215ENST00000525241 DPM1O60762 260 aa2.3□□□□□ -2.04
CD44-215ENST00000525241 MPZL1O95297 269 aa2.3□□□□□ -2.04
CD44-215ENST00000525241 ZNF14P17017 642 aaPredicted RBP2.3□□□□□ -2.04
CD44-215ENST00000525241 HNRNPH3P31942 346 aaKnown RBP2.3□□□□□ -2.04
CD44-215ENST00000525241 TAGLN2P37802 199 aaKnown RBP2.3□□□□□ -2.04
CD44-215ENST00000525241 AQP2P41181 271 aa2.3□□□□□ -2.04
CD44-215ENST00000525241 MXD1Q05195 221 aa2.3□□□□□ -2.04
CD44-215ENST00000525241 TWF1Q12792 350 aa2.3□□□□□ -2.04
CD44-215ENST00000525241 RGNQ15493 299 aa2.3□□□□□ -2.04
CD44-215ENST00000525241 CHRFAM7AQ494W8 412 aa2.3□□□□□ -2.04
CD44-215ENST00000525241 COX19Q49B96 90 aa2.3□□□□□ -2.04
CD44-215ENST00000525241 PRAMEF5Q5TYX0 476 aa2.3□□□□□ -2.04
CD44-215ENST00000525241 PRAMEF6Q5VXH4 476 aa2.3□□□□□ -2.04
CD44-215ENST00000525241 SLC25A34Q6PIV7 304 aa2.3□□□□□ -2.04
CD44-215ENST00000525241 CCDC73Q6ZRK6 1079 aa2.3□□□□□ -2.04
CD44-215ENST00000525241 Q6ZSR3 168 aa2.3□□□□□ -2.04
CD44-215ENST00000525241 NBPF5PQ86XG9 351 aaPredicted RBP2.3□□□□□ -2.04
CD44-215ENST00000525241 ARRDC1Q8N5I2 433 aa2.3□□□□□ -2.04
CD44-215ENST00000525241 RGP1Q92546 391 aaPredicted RBP2.3□□□□□ -2.04
CD44-215ENST00000525241 RBMXL1Q96E39 390 aaKnown RBP2.3□□□□□ -2.04
CD44-215ENST00000525241 SERPINB12Q96P63 405 aa2.3□□□□□ -2.04
CD44-215ENST00000525241 UVRAGQ9P2Y5 699 aa2.3□□□□□ -2.04
CD44-215ENST00000525241 LSM7Q9UK45 103 aaKnown RBP2.3□□□□□ -2.04
CD44-215ENST00000525241 NUP50Q9UKX7 468 aa2.3□□□□□ -2.04
CD44-215ENST00000525241 ST3GAL6Q9Y274 331 aa2.3□□□□□ -2.04
CD44-215ENST00000525241 CSDC2Q9Y534 153 aaKnown RBP2.3□□□□□ -2.04
CD44-215ENST00000525241 TRAV40A0A0B4J280 105 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 C7orf66A4D0T2 115 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 RAD51BO15315 384 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 EEDO75530 441 aaKnown RBP2.29□□□□□ -2.04
CD44-215ENST00000525241 GCM2O75603 506 aaPredicted RBP2.29□□□□□ -2.04
CD44-215ENST00000525241 RCBTB2O95199 551 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 CLIC3O95833 236 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 SERPINA3P01011 423 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 SLC2A3P11169 496 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 CELP19835 753 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 NCF2P19878 526 aaPredicted RBP2.29□□□□□ -2.04
CD44-215ENST00000525241 TCN2P20062 427 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 CCNHP51946 323 aaPredicted RBP2.29□□□□□ -2.04
CD44-215ENST00000525241 PTPN20Q4JDL3 420 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 ANKRD26P1Q6NSI1 321 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 PRMT9Q6P2P2 845 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 PLET1Q6UQ28 207 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 FBXW12Q6X9E4 464 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 UBE2J2Q8N2K1 259 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 B3GNT7Q8NFL0 401 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 OR13C2Q8NGS9 318 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 GPR151Q8TDV0 419 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 C15orf40Q8WUR7 153 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 NARS2Q96I59 477 aaKnown RBP2.29□□□□□ -2.04
CD44-215ENST00000525241 PKNOX2Q96KN3 472 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 ZDHHC4Q9NPG8 344 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 KCNJ16Q9NPI9 418 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 GPATCH2LQ9NWQ4 482 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 PISDQ9UG56 409 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 CABIN1Q9Y6J0 2220 aa2.29□□□□□ -2.04
CD44-215ENST00000525241 PTPRTO14522 1441 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 MAPK8IP3Q9UPT6 1336 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 IGKV1D-17A0A075B6S4 117 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 A0A0U1RQV1 116 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 SGK1O00141 431 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 CLPXO76031 633 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 NDUFB10O96000 172 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 IGKV1-17P01599 117 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 IGLV3-19P01714 112 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 DCNP07585 359 aaKnown RBP2.28□□□□□ -2.04
CD44-215ENST00000525241 ZNF250P15622 560 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 RAB3BP20337 219 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 SLC25A11Q02978 314 aaKnown RBP2.28□□□□□ -2.04
CD44-215ENST00000525241 MAJINQ3KP22 176 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 FAM78AQ5JUQ0 283 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 TMEM205Q6UW68 189 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 BHLHA15Q7RTS1 189 aaPredicted RBP2.28□□□□□ -2.04
CD44-215ENST00000525241 NEGR1Q7Z3B1 354 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 LGI3Q8N145 548 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 LIX1Q8N485 282 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 FBXL13Q8NEE6 735 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 OR9K2Q8NGE7 335 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 RNF139Q8WU17 664 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 RMI2Q96E14 147 aa2.28□□□□□ -2.04
CD44-215ENST00000525241 SEH1LQ96EE3 360 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms