RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 AHSA1O95433 338 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 S1PR1P21453 382 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 CNR1P21554 472 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 HTR1EP28566 365 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 NOS3P29474 1203 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 EMX2Q04743 252 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 CAMK2DQ13557 499 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 RCAN2Q14206 197 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 RSU1Q15404 277 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 CDK20Q8IZL9 346 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 LINC01560Q8TB33 94 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 OR5B2Q96R09 309 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 TRIM2Q9C040 744 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 DNTTIP1Q9H147 329 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 PTGES2Q9H7Z7 377 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 CALHM2Q9HA72 323 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 NANSQ9NR45 359 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 EGFL7Q9UHF1 273 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 IL20RAQ9UHF4 553 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 FBXL3Q9UKT7 428 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 C14orf166Q9Y224 244 aaKnown RBP7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 ZNF337Q9Y3M9 751 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 CHCHD2Q9Y6H1 151 aaPredicted RBP7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 ABCA1O95477 2261 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 PRSS51A0A1B0GVH4 220 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 ZNF705GA8MUZ8 300 aaPredicted RBP7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 CXCL13O43927 109 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 OR10H3O60404 316 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 ATP1B1P05026 303 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 FBP1P09467 338 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 PPICP45877 212 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 VEGFCP49767 419 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 ZNF41P51814 821 aaPredicted RBP7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 MS4A2Q01362 244 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 SRSF1Q07955 248 aaKnown RBP eCLIP7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 BIKQ13323 160 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 DCST2Q5T1A1 773 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 DDI2Q5TDH0 399 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 XKRXQ6PP77 449 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 TEX261Q6UWH6 196 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 FAM131AQ6UXB0 335 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 WDR88Q6ZMY6 472 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 ZNF550Q7Z398 422 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 VRK2Q86Y07 508 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 FAM185AQ8N0U4 392 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 PARP16Q8N5Y8 322 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 MDS2Q8NDY4 140 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 AP3S1Q92572 193 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 CPNE4Q96A23 557 aaPredicted RBP7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 MS4A3Q96HJ5 214 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 C14orf144Q96I85 54 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 HYLS1Q96M11 299 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 RNF145Q96MT1 663 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 ADAT1Q9BUB4 502 aaKnown RBP7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 ASPNQ9BXN1 380 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 USE1Q9NZ43 259 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 SPRR3Q9UBC9 169 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 NDUFAF1Q9Y375 327 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 CCL27Q9Y4X3 112 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 RBM7Q9Y580 266 aaKnown RBP7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 ORC6Q9Y5N6 252 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 U3KQ87 197 aa7.09□□□□□ -1.27
LIMCH1-219ENST00000514096 SLC22A23A1A5C7 686 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 SMIM30A4D0T7 59 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 KRBOX1C9JBD0 128 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 TNFSF11O14788 317 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 FADS1O60427 444 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 MBPP02686 304 aaPredicted RBP7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 RAB6AP20340 208 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 RBP2P50120 134 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 SCAND1P57086 179 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 MGAT2Q10469 447 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 PPP1R8Q12972 351 aaKnown RBP7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 MAD2L1Q13257 205 aaPredicted RBP7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 ARL6IP1Q15041 203 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 PIGGQ5H8A4 983 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 RABL3Q5HYI8 236 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 PAGE3Q5JUK9 113 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 TRIQKQ629K1 86 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 MFSD12Q6NUT3 480 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 LRP11Q86VZ4 500 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 SLC34A3Q8N130 599 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 PRR18Q8N4B5 295 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 BPIFCQ8NFQ6 507 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 CHAC2Q8WUX2 184 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 KLHL15Q96M94 604 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 TCEAL7Q9BRU2 100 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 C1QTNF3Q9BXJ4 246 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 GSX2Q9BZM3 304 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 NKX6-2Q9C056 277 aaPredicted RBP7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 ADAM29Q9UKF5 820 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 FKBP7Q9Y680 259 aa7.09□□□□□ -1.28
LIMCH1-219ENST00000514096 ADAP1O75689 374 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 C8BP07358 591 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 TSPAN19P0C672 248 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 STAG3L3P0CL85 134 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 CLDN15P56746 228 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 FUT7Q11130 342 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 ODF1Q14990 250 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 ZZZ3Q8IYH5 903 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms