RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 CALM1P0DP23 149 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 CALM2P0DP24 149 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 CALM3P0DP25 149 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 ZNF250P15622 560 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 MAS1LP35410 378 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 CEACAM6P40199 344 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 CSNK1A1P48729 337 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 PLP1P60201 277 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 ESRRGP62508 458 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 KCNJ2P63252 427 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 ACTG2P63267 376 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 SYCNQ0VAF6 134 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 ECH1Q13011 328 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 ERCC8Q13216 396 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 MAB21L1Q13394 359 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 PRPSAP1Q14558 356 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 GINS1Q14691 196 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 RGNQ15493 299 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 TGFBIQ15582 683 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 PTPN20Q4JDL3 420 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 CTSL3PQ5NE16 218 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 ZNF684Q5T5D7 378 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 CEMP1Q6PRD7 247 aaPredicted RBP1.16□□□□□ -2.22
SMC4-220ENST00000488017 TEX43Q6ZNM6 134 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 NTM-AS1Q6ZSK4 140 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 ABHD13Q7L211 337 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 NIPA1Q7RTP0 329 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 HDDC2Q7Z4H3 204 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 BIVMQ86UB2 503 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 TMEM135Q86UB9 458 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 OAFQ86UD1 273 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 TGIF2LXQ8IUE1 241 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 EGFL6Q8IUX8 553 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 MS4A15Q8N5U1 240 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 EID2Q8N6I1 236 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 ARL6IP6Q8N6S5 226 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 ZFP41Q8N8Y5 198 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 OR52P1PQ8NH57 321 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 OR4S2Q8NH73 311 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 NT5C3BQ969T7 300 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 NEURL3Q96EH8 262 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 KCNJ16Q9NPI9 418 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 ZNF355PQ9NSJ1 428 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 TMCC3Q9ULS5 477 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 MMACHCQ9Y4U1 282 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 CNTNAP1P78357 1384 aa1.16□□□□□ -2.22
SMC4-220ENST00000488017 MUC6Q6W4X9 2439 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 IGLV3-12A0A075B6K2 115 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 IGHV3-74A0A0B4J1X5 117 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 TRAV39A0A0B4J263 110 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 A0A0B4J2A0 478 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 IGHV5-10-1A0A0J9YXX1 117 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 ZNF816-ZNF321PA0A0X1KG74 233 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 RPL36A-HNRNPH2H7BZ11 118 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 SGK1O00141 431 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 SOX15O60248 233 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 DPM1O60762 260 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 MPZL1O95297 269 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 RAB3DO95716 219 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 IFNA8P32881 189 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 CRYBB2P43320 205 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 ZNF138P52744 262 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 YWHAGP61981 247 aaKnown RBP eCLIP1.15□□□□□ -2.23
SMC4-220ENST00000488017 MRPS22P82650 360 aaKnown RBP1.15□□□□□ -2.23
SMC4-220ENST00000488017 TWF1Q12792 350 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 CLINT1Q14677 625 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 SNRNP35Q16560 246 aaKnown RBP1.15□□□□□ -2.23
SMC4-220ENST00000488017 PRAMEF5Q5TYX0 476 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 PRAMEF6Q5VXH4 476 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 ANKRD22Q5VYY1 191 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 PRMT9Q6P2P2 845 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 PLET1Q6UQ28 207 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 KDELC1Q6UW63 502 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 PEX26Q7Z412 305 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 WDR86Q86TI4 376 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 NBPF5PQ86XG9 351 aaPredicted RBP1.15□□□□□ -2.23
SMC4-220ENST00000488017 OR10R2Q8NGX6 335 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 RHEBL1Q8TAI7 183 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 CXorf40AQ8TE69 158 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 ESR2Q92731 530 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 CREB3L1Q96BA8 519 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 TM4SF18Q96CE8 201 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 PIK3IP1Q96FE7 263 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 ZNF681Q96N22 645 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 RNF157Q96PX1 679 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 SLC25A2Q9BXI2 301 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 NT5C3AQ9H0P0 336 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 ISYNA1Q9NPH2 558 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 KLHL28Q9NXS3 571 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 ZNRD1Q9P1U0 126 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 PISDQ9UG56 409 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 SHPKQ9UHJ6 478 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 IKZF2Q9UKS7 526 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 ST3GAL6Q9Y274 331 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 CSDC2Q9Y534 153 aaKnown RBP1.15□□□□□ -2.23
SMC4-220ENST00000488017 ASB3Q9Y575 518 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 TMEM14AQ9Y6G1 99 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 KANK1Q14678 1352 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 CCDC180Q9P1Z9 1646 aa1.15□□□□□ -2.23
SMC4-220ENST00000488017 FAM240BA0A1B0GVZ2 78 aa1.14□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms