RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 SERPINA5P05154 406 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 CCL2P13500 99 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 HIST1H1CP16403 213 aaKnown RBP12.78□□□□□ -0.36
USP4-212ENST00000486549 ZNF32P17041 273 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 GSTM3P21266 225 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 MSR1P21757 451 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 APOBEC3AP31941 199 aaPredicted RBP12.78□□□□□ -0.36
USP4-212ENST00000486549 ATP5J2P56134 94 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 GALK2Q01415 458 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 HGFACQ04756 655 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 PLP2Q04941 152 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 DBPQ10586 325 aaPredicted RBP12.78□□□□□ -0.36
USP4-212ENST00000486549 SNTB2Q13425 540 aaKnown RBP12.78□□□□□ -0.36
USP4-212ENST00000486549 CCNIQ14094 377 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 DAG1Q14118 895 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 GK3PQ14409 553 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 PABPC1L2AQ5JQF8 200 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 Q5PR19 223 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 FAM27BQ5VT28 67 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 OTPQ5XKR4 325 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 PRSS57Q6UWY2 283 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 FOXL2NBQ6ZUU3 175 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 ASRGL1Q7L266 308 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 DTX2Q86UW9 622 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 PAPD5Q8NDF8 572 aaKnown RBP12.78□□□□□ -0.36
USP4-212ENST00000486549 SLC30A7Q8NEW0 376 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 SDR9C7Q8NEX9 313 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 IL17RDQ8NFM7 739 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 FBXO17Q96EF6 278 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 TSSK2Q96PF2 358 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 NMNAT3Q96T66 252 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 FEVQ99581 238 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 NUAK2Q9H093 628 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 FN3KQ9H479 309 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 POLE4Q9NR33 117 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 CA10Q9NS85 328 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 CBLN4Q9NTU7 201 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 DNAJB9Q9UBS3 223 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 COA3Q9Y2R0 106 aaPredicted RBP12.78□□□□□ -0.36
USP4-212ENST00000486549 IQCMA0A1B0GVH7 501 aa12.77□□□□□ -0.37
USP4-212ENST00000486549 SCG5P05408 212 aa12.77□□□□□ -0.37
USP4-212ENST00000486549 CST2P09228 141 aa12.77□□□□□ -0.37
USP4-212ENST00000486549 MMP7P09237 267 aaPredicted RBP12.77□□□□□ -0.37
USP4-212ENST00000486549 THBS4P35443 961 aa12.77□□□□□ -0.37
USP4-212ENST00000486549 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.77□□□□□ -0.37
USP4-212ENST00000486549 DNM1P34Q6PK57 102 aa12.77□□□□□ -0.37
USP4-212ENST00000486549 UGT2A3Q6UWM9 527 aa12.77□□□□□ -0.37
USP4-212ENST00000486549 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.77□□□□□ -0.37
USP4-212ENST00000486549 BIVMQ86UB2 503 aa12.77□□□□□ -0.37
USP4-212ENST00000486549 WFDC11Q8NEX6 87 aa12.77□□□□□ -0.37
USP4-212ENST00000486549 NUP37Q8NFH4 326 aa12.77□□□□□ -0.37
USP4-212ENST00000486549 OR52E2Q8NGJ4 325 aa12.77□□□□□ -0.37
USP4-212ENST00000486549 AKR7LQ8NHP1 331 aa12.77□□□□□ -0.37
USP4-212ENST00000486549 UTP4Q969X6 686 aaKnown RBP12.77□□□□□ -0.37
USP4-212ENST00000486549 ZNF416Q9BWM5 594 aa12.77□□□□□ -0.37
USP4-212ENST00000486549 TSSK6Q9BXA6 273 aa12.77□□□□□ -0.37
USP4-212ENST00000486549 CACNG6Q9BXT2 260 aa12.77□□□□□ -0.37
USP4-212ENST00000486549 GSX2Q9BZM3 304 aa12.77□□□□□ -0.37
USP4-212ENST00000486549 CDH20Q9HBT6 801 aa12.77□□□□□ -0.37
USP4-212ENST00000486549 RPRD1BQ9NQG5 326 aaKnown RBP12.77□□□□□ -0.37
USP4-212ENST00000486549 ARMC1Q9NVT9 282 aa12.77□□□□□ -0.37
USP4-212ENST00000486549 IL20Q9NYY1 176 aa12.77□□□□□ -0.37
USP4-212ENST00000486549 ARRDC5A6NEK1 342 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 H3BN98 237 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 OVOL3O00110 214 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 DCTN6O00399 190 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 BHLHE40O14503 412 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 IDH3BO43837 385 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 MGRN1O60291 552 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 DEAF1O75398 565 aaPredicted RBP12.76□□□□□ -0.37
USP4-212ENST00000486549 MPZL1O95297 269 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 GPANK1O95872 356 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 OR4A8P0C604 315 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 ZNF35P13682 527 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 PRKACGP22612 351 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 APEX1P27695 318 aaKnown RBP12.76□□□□□ -0.37
USP4-212ENST00000486549 CRABP1P29762 137 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 APLNRP35414 380 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 ENDOGQ14249 297 aaKnown RBP12.76□□□□□ -0.37
USP4-212ENST00000486549 TBC1D28Q2M2D7 210 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 SLC36A3Q495N2 470 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 C11orf71Q6IPW1 123 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 YTHDF3Q7Z739 585 aaKnown RBP12.76□□□□□ -0.37
USP4-212ENST00000486549 KRTAP1-3Q8IUG1 177 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 GLB1L2Q8IW92 636 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 TEX47Q8TBZ9 253 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 TRMT61AQ96FX7 289 aaKnown RBP12.76□□□□□ -0.37
USP4-212ENST00000486549 OR2H1Q9GZK4 316 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 OR51B6Q9H340 312 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 SRA1Q9HD15 236 aaKnown RBP12.76□□□□□ -0.37
USP4-212ENST00000486549 ZNF701Q9NV72 531 aaPredicted RBP12.76□□□□□ -0.37
USP4-212ENST00000486549 SPEF1Q9Y4P9 236 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 C2CD3Q4AC94 2353 aa12.76□□□□□ -0.37
USP4-212ENST00000486549 OR6C68A6NDL8 312 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 C12orf71A8MTZ7 269 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 GPRIN2O60269 458 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 NDUFS7O75251 213 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 PTHP01270 115 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 TP53P04637 393 aaPredicted RBP12.75□□□□□ -0.37
USP4-212ENST00000486549 FAM157BP0CG42 384 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms