RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 SERPINE3A8MV23 424 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 SMKR1H3BMG3 65 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 XKRYO14609 159 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 CHMP2AO43633 222 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 FKBP6O75344 327 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 MOSP00540 346 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 TACSTD2P09758 323 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 KLK2P20151 261 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 FUT3P21217 361 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 LONP1P36776 959 aaKnown RBP3.58□□□□□ -1.84
UPF3B-203ENST00000478840 NBL1P41271 181 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 ETV1P50549 477 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 SH3BGRP55822 239 aaPredicted RBP3.58□□□□□ -1.84
UPF3B-203ENST00000478840 GNB2P62879 340 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 GGTLC2Q14390 218 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 PSMD5Q16401 504 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 KCTD19Q17RG1 926 aaPredicted RBP3.58□□□□□ -1.84
UPF3B-203ENST00000478840 TMEM255AQ5JRV8 349 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 PAGE3Q5JUK9 113 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 UBE2UQ5VVX9 321 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 ANKRD22Q5VYY1 191 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 SUMF2Q8NBJ7 301 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 INO80EQ8NBZ0 244 aaPredicted RBP3.58□□□□□ -1.84
UPF3B-203ENST00000478840 MITD1Q8WV92 249 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 GEMIN6Q8WXD5 167 aaKnown RBP3.58□□□□□ -1.84
UPF3B-203ENST00000478840 KIAA1143Q96AT1 154 aaPredicted RBP3.58□□□□□ -1.84
UPF3B-203ENST00000478840 ECHDC3Q96DC8 303 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 OR5B12Q96R08 314 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 GABARAPL3Q9BY60 117 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 YTHDF1Q9BYJ9 559 aaKnown RBP3.58□□□□□ -1.84
UPF3B-203ENST00000478840 MRPL37Q9BZE1 423 aaKnown RBP3.58□□□□□ -1.84
UPF3B-203ENST00000478840 RCL1Q9Y2P8 373 aaKnown RBP3.58□□□□□ -1.84
UPF3B-203ENST00000478840 F11RQ9Y624 299 aaKnown RBP3.58□□□□□ -1.84
UPF3B-203ENST00000478840 KCNE3Q9Y6H6 103 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 UBN2Q6ZU65 1347 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 IGLV3-10A0A075B6K4 115 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 SIVA1O15304 175 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 TNFSF13O75888 250 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 SCELO95171 688 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 HBE1P02100 147 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 S100A9P06702 114 aaKnown RBP3.57□□□□□ -1.84
UPF3B-203ENST00000478840 CALM1P0DP23 149 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 CALM2P0DP24 149 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 CALM3P0DP25 149 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 BMI1P35226 326 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 RBMXP38159 391 aaKnown RBP3.57□□□□□ -1.84
UPF3B-203ENST00000478840 SLC26A3P40879 764 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 CAV2P51636 162 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 REG3AQ06141 175 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 GUCA2BQ16661 112 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 ZNF630Q2M218 657 aaPredicted RBP3.57□□□□□ -1.84
UPF3B-203ENST00000478840 RPEL1Q2QD12 228 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 RFX4Q33E94 735 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 AADACL4Q5VUY2 407 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 MBOAT1Q6ZNC8 495 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 TEX43Q6ZNM6 134 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 OR2L5Q8NG80 312 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 RAB1CQ92928 201 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 TSSK3Q96PN8 268 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 LZTS2Q9BRK4 669 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 PIGUQ9H490 435 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 CENPJQ9HC77 1338 aaPredicted RBP3.57□□□□□ -1.84
UPF3B-203ENST00000478840 PRSS16Q9NQE7 514 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 PLSCR3Q9NRY6 295 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 PRR34Q9NV39 138 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 ST3GAL6Q9Y274 331 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 COMMD3-BMI1R4GMX3 469 aa3.57□□□□□ -1.84
UPF3B-203ENST00000478840 AGRNO00468 2067 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 A0A1B0GW55 424 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 TSPAN11A1L157 253 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 A6NDN8 102 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 HIDE1A8MVS5 230 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 K7EMT4 169 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 NUPL2O15504 423 aaKnown RBP3.56□□□□□ -1.84
UPF3B-203ENST00000478840 LSM8O95777 96 aaKnown RBP3.56□□□□□ -1.84
UPF3B-203ENST00000478840 CSTAP01040 98 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 IGKV3-15P01624 115 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 IGLV1-47P01700 117 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 IVLP07476 585 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 GIPP09681 153 aaPredicted RBP3.56□□□□□ -1.84
UPF3B-203ENST00000478840 ZDHHC11BP0C7U3 371 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 UBTFL6P0CB48 400 aaPredicted RBP3.56□□□□□ -1.84
UPF3B-203ENST00000478840 DUX4L2P0CJ85 424 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 DUX4L3P0CJ86 424 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 DUX4L4P0CJ87 422 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 DUX4L5P0CJ88 424 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 DUX4L6P0CJ89 424 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 DUX4L7P0CJ90 424 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 UBE2MP61081 183 aaKnown RBP3.56□□□□□ -1.84
UPF3B-203ENST00000478840 RPS15AP62244 130 aaKnown RBP3.56□□□□□ -1.84
UPF3B-203ENST00000478840 PON3Q15166 354 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 TRMT5Q32P41 509 aaKnown RBP3.56□□□□□ -1.84
UPF3B-203ENST00000478840 HNRNPA1L2Q32P51 320 aaKnown RBP3.56□□□□□ -1.84
UPF3B-203ENST00000478840 ZBED5Q49AG3 693 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 CCNJQ5T5M9 372 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 FHL5Q5TD97 284 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 DUX4L9Q6RFH8 374 aaPredicted RBP3.56□□□□□ -1.84
UPF3B-203ENST00000478840 NPSR1Q6W5P4 371 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 LINC00173Q6ZV60 143 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 PDCL2Q8N4E4 241 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms