RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 C3orf36Q3SXR2 165 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 NRN1LQ496H8 165 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 ZNF362Q5T0B9 420 aaPredicted RBP8.4□□□□□ -1.06
HDAC3-208ENST00000476739 SLC35F1Q5T1Q4 408 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 LEG1Q6P5S2 330 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 RASSF6Q6ZTQ3 369 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 FOXL2NBQ6ZUU3 175 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 SLC16A14Q7RTX9 510 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 KRTAP1-3Q8IUG1 177 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 CCDC36Q8IYA8 594 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 ALDH16A1Q8IZ83 802 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 PAQR4Q8N4S7 273 aaPredicted RBP8.4□□□□□ -1.06
HDAC3-208ENST00000476739 OR52E2Q8NGJ4 325 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 NANOS1Q8WY41 292 aaKnown RBP8.4□□□□□ -1.06
HDAC3-208ENST00000476739 DDOQ99489 341 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 FOXC2Q99958 501 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 NDEL1Q9GZM8 345 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 NUAK2Q9H093 628 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 CXXC4Q9H2H0 198 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 RERGLQ9H628 205 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 SIAEQ9HAT2 523 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 EMC7Q9NPA0 242 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 DNAJB9Q9UBS3 223 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 REV1Q9UBZ9 1251 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 POU2F3Q9UKI9 436 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 COA3Q9Y2R0 106 aaPredicted RBP8.4□□□□□ -1.06
HDAC3-208ENST00000476739 COMMD3-BMI1R4GMX3 469 aa8.4□□□□□ -1.06
HDAC3-208ENST00000476739 ZNF469Q96JG9 3925 aaPredicted RBP8.39□□□□□ -1.07
HDAC3-208ENST00000476739 MAGEA13PA6NCF6 341 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 OR6C68A6NDL8 312 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 FAM171A2A8MVW0 826 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 RAB36O95755 333 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 CRYAAP02489 173 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 ZNF35P13682 527 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 NPR2P20594 1047 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 TTKP33981 857 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.39□□□□□ -1.07
HDAC3-208ENST00000476739 MSMPQ1L6U9 139 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 FAM27BQ5VT28 67 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 C11orf71Q6IPW1 123 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 VHLLQ6RSH7 139 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 AMIGO2Q86SJ2 522 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 OR6V1Q8N148 313 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 DEPDC4Q8N2C3 294 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 IQCF1Q8N6M8 205 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 CPEB3Q8NE35 698 aaKnown RBP8.39□□□□□ -1.07
HDAC3-208ENST00000476739 SDR9C7Q8NEX9 313 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 AKR7LQ8NHP1 331 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 FNDC8Q8TC99 324 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 ZNRF4Q8WWF5 429 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 LRTOMTQ8WZ04 291 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 PIGTQ969N2 578 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 PERPQ96FX8 193 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 DUS3LQ96G46 650 aaKnown RBP8.39□□□□□ -1.07
HDAC3-208ENST00000476739 DHRS9Q9BPW9 319 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 TRAF4Q9BUZ4 470 aaPredicted RBP8.39□□□□□ -1.07
HDAC3-208ENST00000476739 ZNF416Q9BWM5 594 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 TSSK6Q9BXA6 273 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 RNF121Q9H920 327 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 SRA1Q9HD15 236 aaKnown RBP8.39□□□□□ -1.07
HDAC3-208ENST00000476739 POLE4Q9NR33 117 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 TBC1D23Q9NUY8 699 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 BEX4Q9NWD9 120 aaPredicted RBP8.39□□□□□ -1.07
HDAC3-208ENST00000476739 EDARQ9UNE0 448 aa8.39□□□□□ -1.07
HDAC3-208ENST00000476739 VPS13CQ709C8 3753 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 IGLV1-36A0A0B4J1U3 117 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 ARRDC5A6NEK1 342 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 OVOL3O00110 214 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 GPRIN2O60269 458 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 SMPD2O60906 423 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 NDUFS7O75251 213 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 KHDRBS3O75525 346 aaKnown RBP8.38□□□□□ -1.07
HDAC3-208ENST00000476739 CIB2O75838 187 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 SERPINA5P05154 406 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 CST2P09228 141 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 NR2C1P13056 603 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 HOXB6P17509 224 aaKnown RBP8.38□□□□□ -1.07
HDAC3-208ENST00000476739 GSTM3P21266 225 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 MSR1P21757 451 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 APEX1P27695 318 aaKnown RBP8.38□□□□□ -1.07
HDAC3-208ENST00000476739 NOS3P29474 1203 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 THBS4P35443 961 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 PTH2RP49190 550 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 FABP6P51161 128 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 ACTR3P61158 418 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 NKX6-1P78426 367 aaPredicted RBP8.38□□□□□ -1.07
HDAC3-208ENST00000476739 PSG4Q00888 419 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 GK3PQ14409 553 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 ATP6AP1Q15904 470 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 MEP1BQ16820 701 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 MST1LQ2TV78 715 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 SLC36A2Q495M3 483 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 SLC36A3Q495N2 470 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 PABPC1L2AQ5JQF8 200 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 KRT80Q6KB66 452 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 RPL13AP3Q6NVV1 102 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 TMEM53Q6P2H8 277 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 SHQ1Q6PI26 577 aaKnown RBP8.38□□□□□ -1.07
HDAC3-208ENST00000476739 CD300LDQ6UXZ3 194 aa8.38□□□□□ -1.07
HDAC3-208ENST00000476739 ADCK1Q86TW2 530 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms